PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c6_28370V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 592aa MW: 63331.8 Da PI: 6.8596 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.6e-19 | 243 | 292 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae+Aa a++ a+ +++g Pp3c6_28370V3.2.p 243 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFDTAEQAAMAYDTAAIRFRG 292 7********.**********93....36************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.4E-36 | 243 | 306 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.59E-33 | 243 | 301 | No hit | No description |
Pfam | PF00847 | 2.4E-13 | 243 | 292 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-32 | 243 | 301 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-22 | 243 | 301 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.37 | 243 | 300 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 244 | 255 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 266 | 282 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 592 aa Download sequence Send to blast |
MCFLQSLPGR NLSSDKLDPS NDPPDTGGHS SPSRTRAGSG QISKAFKMVS ALTQTGGASS 60 RQDYPESQRA ENTAPGKGIV GQKRHRSSPT AQELVGYGET WNEQAPSARN IKQEVGTSTG 120 ALKRETDAGS YVNVTDARAV TWTRVLVDPK AESTERPGTY SRSLSLTQEI FTSQDSCKIS 180 DLSTPPHSSP LSIEDVPRPS GGNLEKLDQA GKVGDGSSHQ QESSEAGPLV TQQVLAPPPK 240 KRRYRGVRQR PWGKWAAEIR DPQKAARVWL GTFDTAEQAA MAYDTAAIRF RGLRAKLNFP 300 DGLISPASLA VGIATASQPE SSPTSIPVTT LSTSTSFLSQ SSGRSIQSMP RSRNLPSISS 360 EARTSVPYQS PSVPLPSHQI SSGASAQNLR SLQAPGIFEP LARSPGLMQL SGSNSGDNQS 420 GRRQGLMSFQ QPQTHPQWQR LQPGSYQSLV PVQQQNSQTL RQTPELSRPI SSLQYENLYG 480 EGPHDPILHY EPSTSGVPQS FSVDFCGANL ISDPGGQGFP TSQSPTAFID HHSPSSASVS 540 SANPTPYIEL SYDQIFDQPG EVQSTFPDAV SPSGILSLDN PFSDDTSLCQ E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-23 | 242 | 300 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00289 | DAP | Transfer from AT2G33710 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024379224.1 | 0.0 | uncharacterized protein LOC112284010 | ||||
Refseq | XP_024379225.1 | 0.0 | uncharacterized protein LOC112284010 | ||||
TrEMBL | A0A2K1KHH2 | 0.0 | A0A2K1KHH2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S117_32V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 3e-32 | related to AP2 6l |
Link Out ? help Back to Top | |
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Phytozome | Pp3c6_28370V3.2.p |