PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c6_28300V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

ZF-HD

Protein Properties

Length: 460aa MW: 51414.6 Da PI: 8.3799

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c6_28300V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	50	6.7e-16	74	123	4	55
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRr 55 ++ keC+ NhA + h +DGCgEfm g++ ++al+C ACgCHR +HR Pp3c6_28300V3.1.p 74 IVCKECQNNHALDGVNHCIDGCGEFMRR-GRD-GPEALQCMACGCHRRYHRC 123 6779*********************9.555.69**************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	5.7E-14	76	122	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	17.701	76	124	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-8	77	122	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.2E-14	77	122	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.27E-7	259	330	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.0E-15	261	331	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MTNKLFRWDL NPIHLGENQT SGNLSDNHNP AKWMNTNTAP RLRGQLANDD FLGFSPDQRS 60 VQQNLQPKSG HCVIVCKECQ NNHALDGVNH CIDGCGEFMR RGRDGPEALQ CMACGCHRRY 120 HRCVGVGDNG NEPQNIDEAD GAAPRISNDD LQLSLSRTET VSPNLMEATG RALSLLATDH 180 PSRGADDLAI QDLDTVMKIS IDNLDHISTQ RASSRESQTM PDYPLCPVRT TDNRRRSQSL 240 QFNHNNLQQA DRTSAPNWNA QQGSHPGGPE IKRKQFFDEQ RRKMKAYAEH VGWTNFGQRK 300 ENIAAACKDI GVTPKTLKYW IHNAKQKLKR SHEQPLQHSH TAHTQTDWKF RVLSKIVEGV 360 GTKYHTCSCC NLQRMFHSKN IHLGAVAKNC QAAVRHVFSH GQNACMLRTS AQELHDVPVP 420 DGCKHPFLGS LITITLFKSN VATDSDALSK IHETSRNQC*

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MTNKLFRWDL NPIHLGENQT SGNLSDNHNP AKWMNTNTAP RLRGQLANDD FLGFSPDQRS  60
VQQNLQPKSG HCVIVCKECQ NNHALDGVNH CIDGCGEFMR RGRDGPEALQ CMACGCHRRY  120
HRCVGVGDNG NEPQNIDEAD GAAPRISNDD LQLSLSRTET VSPNLMEATG RALSLLATDH  180
PSRGADDLAI QDLDTVMKIS IDNLDHISTQ RASSRESQTM PDYPLCPVRT TDNRRRSQSL  240
QFNHNNLQQA DRTSAPNWNA QQGSHPGGPE IKRKQFFDEQ RRKMKAYAEH VGWTNFGQRK  300
ENIAAACKDI GVTPKTLKYW IHNAKQKLKR SHEQPLQHSH TAHTQTDWKF RVLSKIVEGV  360
GTKYHTCSCC NLQRMFHSKN IHLGAVAKNC QAAVRHVFSH GQNACMLRTS AQELHDVPVP  420
DGCKHPFLGS LITITLFKSN VATDSDALSK IHETSRNQC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024375488.1	1e-154	uncharacterized protein LOC112282289
TrEMBL	A0A2K1KHY5	1e-152	A0A2K1KHY5_PHYPA; Uncharacterized protein
STRING	PP1S117_24V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18350.1	1e-11	homeobox protein 24

Link Out ? help Back to Top
Phytozome	Pp3c6_28300V3.1.p