PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_28290V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 278aa    MW: 29908.4 Da    PI: 5.9743
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_28290V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.3e-1955104255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ykGVr +  +g+Wv+eIr+p   +kr r++lg+f tae+Aaka++aa  +l+g
  Pp3c6_28290V3.2.p  55 VYKGVRMRA-WGKWVSEIREP---NKRSRIWLGSFPTAEMAAKAYDAAVVCLRG 104
                        7*****998.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.62955112IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-2155113IPR016177DNA-binding domain
SMARTSM003806.4E-3655118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-3155113IPR001471AP2/ERF domain
PfamPF008471.4E-1155104IPR001471AP2/ERF domain
CDDcd000182.34E-3156114No hitNo description
PRINTSPR003672.8E-95667IPR001471AP2/ERF domain
PRINTSPR003672.8E-97894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MVEKAPDPQP LSAKRARVLL APRMAPTSVS KKPSQGKQIH NTTSTSTSPP GSGKVYKGVR  60
MRAWGKWVSE IREPNKRSRI WLGSFPTAEM AAKAYDAAVV CLRGPSAPLN FPDTPPSDLP  120
LCSTPRDVQA AAAAAAAACP PLLNQLHAGA TRTTSPSPQE NIIDSNSLHP HQFYSSSSPP  180
DTASQQSSAH FTFPVLESKS IATDMEDWIN AELGYFEPLD ADALAYLSEL MLPSDVVTPV  240
MDSIAFHDDP PSESHPPGSD TSDDHNDQFH HNLWSFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-1653112363ATERF1
3gcc_A7e-1653112363ATERF1
5wx9_A3e-15561121572Ethylene-responsive transcription factor ERF096
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.90490.0gametophore
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1594000.0AC159400.2 Physcomitrella patens clone JGIASYB-5P18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024377678.10.0ethylene-responsive transcription factor ERF043-like
TrEMBLA0A2K1KHE90.0A0A2K1KHE9_PHYPA; Uncharacterized protein
STRINGPP1S117_23V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06746.12e-29related to AP2 9