PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_28230V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 407aa    MW: 45299.9 Da    PI: 7.8189
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_28230V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.42.7e-53151421128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelv +yL++k++++ +++  vi+ev++yk++PwdLp k+  +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++
  Pp3c6_28230V3.1.p  15 LPPGFRFHPTDEELVLHYLRRKADSHVFQI-PVIAEVNLYKFDPWDLPDKALFGEREWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPI 105
                        79***************************9.89***************8777899************************************* PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + + ++++vg+kk Lvfy+g+apkgekt+W+mheyrl
  Pp3c6_28230V3.1.p 106 HMTnGHSKVGVKKALVFYRGKAPKGEKTNWIMHEYRL 142
                        99856778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-636171IPR003441NAC domain
PROSITE profilePS5100561.09715171IPR003441NAC domain
PfamPF023652.9E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MVIMETGGSI SQLQLPPGFR FHPTDEELVL HYLRRKADSH VFQIPVIAEV NLYKFDPWDL  60
PDKALFGERE WYFFSPRDRK YPNGARPNRA AASGYWKATG TDKPIHMTNG HSKVGVKKAL  120
VFYRGKAPKG EKTNWIMHEY RLAEGVSPSA HHHRRGSLRL DDWVLCRIYE KCTHAQRAGK  180
EHDRASVEDV LASLPEIDDP NHMLPRLNSM GMMESAQQQA LVDSMLTKGP SDDGCSLSVS  240
IDSLQRGMIS SNPDVAAHEL QTSTLTNEWK MQVSLDSTPN HLIGYDFQNE LGSVSSAMRP  300
TLNIRPSMAG SAMTHFQNPQ RSSNNIGARM VARSMPVPPG RAASDEEVQS TLRSSTTRFG  360
NGNEGLESMF PTMGNFDQQA QSTSPYTRNT MAYNLPYGHG SLGTFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-8011777174NAC domain-containing protein 19
3swm_B6e-8011777174NAC domain-containing protein 19
3swm_C6e-8011777174NAC domain-containing protein 19
3swm_D6e-8011777174NAC domain-containing protein 19
3swp_A6e-8011777174NAC domain-containing protein 19
3swp_B6e-8011777174NAC domain-containing protein 19
3swp_C6e-8011777174NAC domain-containing protein 19
3swp_D6e-8011777174NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.26901e-117protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and in root pericycle and epidermis. {ECO:0000269|PubMed:15319476, ECO:0000269|PubMed:16581911}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:15319476, ECO:0000269|Ref.7}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024378704.10.0NAC domain-containing protein 67-like
SwissprotQ93VY31e-84NAC72_ARATH; NAC domain-containing protein 72
TrEMBLA0A2K1KHE60.0A0A2K1KHE6_PHYPA; Uncharacterized protein
STRINGPP1S117_16V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.25e-87NAC family protein
Publications ? help Back to Top
  1. Zhu X, et al.
    Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes.
    Plant J., 2015. 84(3): p. 597-610
    [PMID:26407000]
  2. Li S, et al.
    The role of ANAC072 in the regulation of chlorophyll degradation during age- and dark-induced leaf senescence.
    Plant Cell Rep., 2016. 35(8): p. 1729-41
    [PMID:27154758]
  3. Ye H, et al.
    RD26 mediates crosstalk between drought and brassinosteroid signalling pathways.
    Nat Commun, 2017. 8: p. 14573
    [PMID:28233777]