PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c6_27690V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NAC

Protein Properties

Length: 417aa MW: 46481.9 Da PI: 6.5671

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c6_27690V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.9	1.1e-54	18	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtd+elv++yL +k+++ ++ + ++i++vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg+r+nrat++gyWkatgkd++v Pp3c6_27690V3.1.p 18 LPPGFRFHPTDDELVSFYLVRKISNPQVVV-KTIPNVDLNKCEPWDLPDKAKVGEKEWYFFSLRDRKYPTGQRTNRATDKGYWKATGKDRDV 108 79***********************998.88***********99999*********************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ++ lvg+kktLvfy grapkg kt+W+mheyrl Pp3c6_27690V3.1.p 109 MNSgTHCLVGMKKTLVFYMGRAPKGLKTNWIMHEYRL 145 855556***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.76E-63	14	174	IPR003441	NAC domain
PROSITE profile	PS51005	60.017	18	174	IPR003441	NAC domain
Pfam	PF02365	1.2E-27	19	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MCNGKNTIEM QQDSNLELPP GFRFHPTDDE LVSFYLVRKI SNPQVVVKTI PNVDLNKCEP 60 WDLPDKAKVG EKEWYFFSLR DRKYPTGQRT NRATDKGYWK ATGKDRDVMN SGTHCLVGMK 120 KTLVFYMGRA PKGLKTNWIM HEYRLGSDSS NHFNGQQSHR YKNNEWVVCR VFQKTGGSKT 180 LGLSSTDKAS YQPAAHLHYA LPGNHRDSSP NPTVTDSDDG DTCTAAESCH NSQDSYLDAG 240 VYVAQMLTQG DVTSVGAPQW AAPGSVPMAT PVMDIQPHNT MKESYYNHQN GANMSMLFSP 300 PPQNMVSYPL IPHIGNRMRP KQEPFYPTTC AGEDEAESSQ KLNKLDYAWT GDVLNPEYYP 360 CDSPLTPLQS IVGESGQTSS CLTDGNALHN RAFRGSFSGF QEMAGPIELT TQEWAY*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MCNGKNTIEM QQDSNLELPP GFRFHPTDDE LVSFYLVRKI SNPQVVVKTI PNVDLNKCEP  60
WDLPDKAKVG EKEWYFFSLR DRKYPTGQRT NRATDKGYWK ATGKDRDVMN SGTHCLVGMK  120
KTLVFYMGRA PKGLKTNWIM HEYRLGSDSS NHFNGQQSHR YKNNEWVVCR VFQKTGGSKT  180
LGLSSTDKAS YQPAAHLHYA LPGNHRDSSP NPTVTDSDDG DTCTAAESCH NSQDSYLDAG  240
VYVAQMLTQG DVTSVGAPQW AAPGSVPMAT PVMDIQPHNT MKESYYNHQN GANMSMLFSP  300
PPQNMVSYPL IPHIGNRMRP KQEPFYPTTC AGEDEAESSQ KLNKLDYAWT GDVLNPEYYP  360
CDSPLTPLQS IVGESGQTSS CLTDGNALHN RAFRGSFSGF QEMAGPIELT TQEWAY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	14	174	13	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	14	174	13	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	14	174	13	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	14	174	13	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-53	14	174	16	168	NAC domain-containing protein 19
3swm_B	1e-53	14	174	16	168	NAC domain-containing protein 19
3swm_C	1e-53	14	174	16	168	NAC domain-containing protein 19
3swm_D	1e-53	14	174	16	168	NAC domain-containing protein 19
3swp_A	1e-53	14	174	16	168	NAC domain-containing protein 19
3swp_B	1e-53	14	174	16	168	NAC domain-containing protein 19
3swp_C	1e-53	14	174	16	168	NAC domain-containing protein 19
3swp_D	1e-53	14	174	16	168	NAC domain-containing protein 19
3ulx_A	1e-53	9	174	6	168	Stress-induced transcription factor NAC1
4dul_A	1e-53	14	174	13	165	NAC domain-containing protein 19
4dul_B	1e-53	14	174	13	165	NAC domain-containing protein 19

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.7271	0.0	protonema

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00662	PBM	25215497	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024378753.1	0.0	NAC domain-containing protein 92-like
Refseq	XP_024378754.1	0.0	NAC domain-containing protein 92-like
TrEMBL	A0A2K1KHE3	0.0	A0A2K1KHE3_PHYPA; Uncharacterized protein
STRING	PP1S279_85V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	4e-74	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	Pp3c6_27690V3.1.p