PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c6_26080V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 543aa MW: 59520.4 Da PI: 7.3682 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.4 | 7.5e-18 | 263 | 312 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd +ng +r++lg+++ta++Aa a+++a+ +++g Pp3c6_26080V3.4.p 263 YRGVRRRP-WGKFAAEIRDSAQNG--ARIWLGTYDTAYDAACAYDQAAFEMRG 312 9*******.**********65565..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.6E-34 | 262 | 326 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-29 | 262 | 321 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.471 | 262 | 320 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.95E-27 | 262 | 320 | No hit | No description |
Pfam | PF00847 | 5.7E-12 | 263 | 312 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-12 | 263 | 274 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 263 | 321 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.1E-12 | 302 | 322 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MNRTLVEKMA VLPYSSVPRT TMQSQGMIEK FRHYLLEDDD NCLAEEHFLQ PANMVGLSGD 60 MSTEAFFKSL VSPMPSPRGR LGCEETKPIS ARDGSEISET IDAQELSDGQ SQVQDQSSVI 120 SNRTGRPLPN LTLPATYLAT KMSLKRTVSQ EKSLSGVSSS SLEKDEYVNM FLQSVFRDHE 180 GNVDGWCDAT PYSKVDPCST EIEPSSQGTE PSSMAGGRSS PAQQASSVDQ KSKSNDSVPV 240 HNSESSPTVA RAPIQKPPRS LNYRGVRRRP WGKFAAEIRD SAQNGARIWL GTYDTAYDAA 300 CAYDQAAFEM RGCKALLNFP LKANIYAANL SAKNSKDHHA YDSTHPGSPV RMTPKHIQVP 360 VSMSAERLLS HHQGESFPTS SSSSSYGSPN FSGSRVSPGS LPMQSSPSGG LSPELQFRAA 420 LWLQRAAASI QESSSLSPYV QMAQLLGARQ RIAAVPSYYD EFVASQQIPD ARGYPFSPQA 480 AMDFHDAFAQ LQSATSPLMD LPAATSFRSG LKRSRSREMW EESVKRTCHV DRWQHQVPVR 540 FY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-27 | 262 | 324 | 5 | 67 | ATERF1 |
3gcc_A | 2e-27 | 262 | 324 | 5 | 67 | ATERF1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 511 | 516 | KRSRSR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.3257 | 0.0 | gametophore |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024378247.1 | 0.0 | uncharacterized protein LOC112283586 | ||||
TrEMBL | A0A2K1KH57 | 0.0 | A0A2K1KH57_PHYPA; Uncharacterized protein | ||||
STRING | PP1S53_80V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 5e-23 | ethylene responsive element binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c6_26080V3.4.p |