PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_26080V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 556aa    MW: 61034.2 Da    PI: 7.3687
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_26080V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.7e-18263312355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+++AeIrd  +ng  +r++lg+++ta++Aa a+++a+ +++g
  Pp3c6_26080V3.3.p 263 YRGVRRRP-WGKFAAEIRDSAQNG--ARIWLGTYDTAYDAACAYDQAAFEMRG 312
                        9*******.**********65565..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.6E-34262326IPR001471AP2/ERF domain
PROSITE profilePS5103222.471262320IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-29262321IPR001471AP2/ERF domain
CDDcd000187.32E-27262320No hitNo description
PfamPF008475.9E-12263312IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-21263321IPR016177DNA-binding domain
PRINTSPR003675.3E-12263274IPR001471AP2/ERF domain
PRINTSPR003675.3E-12302322IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MNRTLVEKMA VLPYSSVPRT TMQSQGMIEK FRHYLLEDDD NCLAEEHFLQ PANMVGLSGD  60
MSTEAFFKSL VSPMPSPRGR LGCEETKPIS ARDGSEISET IDAQELSDGQ SQVQDQSSVI  120
SNRTGRPLPN LTLPATYLAT KMSLKRTVSQ EKSLSGVSSS SLEKDEYVNM FLQSVFRDHE  180
GNVDGWCDAT PYSKVDPCST EIEPSSQGTE PSSMAGGRSS PAQQASSVDQ KSKSNDSVPV  240
HNSESSPTVA RAPIQKPPRS LNYRGVRRRP WGKFAAEIRD SAQNGARIWL GTYDTAYDAA  300
CAYDQAAFEM RGCKALLNFP LKANIYAANL SAKNSKDHHA YDSTHPGSPV RMTPKHIQVP  360
VSMSAERLLS HHQGESFPTS SSSSSYGSPN FSGSRVSPGS LPMQSSPSGG LSPELQFRAA  420
LWLQRAAASI QESSSLSPYV QMAQLLGARQ RIAAVPSYYD EFVASQQIPD ARGYPFSPQA  480
AMDFHDAFAQ LQSATSPLMD LPAATSFRSG LKRSRSREMW EESVKRTCHV DRWQHQVPRL  540
RDDDILWRLW AIGAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-27262324567ATERF1
3gcc_A3e-27262324567ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1511516KRSRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.32570.0gametophore
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024378247.10.0uncharacterized protein LOC112283586
TrEMBLA0A2K1KH570.0A0A2K1KH57_PHYPA; Uncharacterized protein
STRINGPP1S53_80V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.16e-23ethylene responsive element binding factor 1