PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c6_24650V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB | ||||||||
Protein Properties | Length: 432aa MW: 46747.7 Da PI: 5.2496 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 7e-17 | 28 | 73 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G ++W++Iar ++ gR++k+c++rw + Pp3c6_24650V3.1.p 28 KGPWSPEEDVVLNRLVEKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 73 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 58.9 | 1.1e-18 | 80 | 124 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eEd +v a++ +G++ W++Iar+++ gRt++ +k++w++ Pp3c6_24650V3.1.p 80 RKPFTEEEDRAIVAAHAIHGNK-WASIARMLP-GRTDNAIKNHWNST 124 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.752 | 23 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.03E-31 | 26 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 27 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-16 | 28 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-26 | 29 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.96E-14 | 30 | 72 | No hit | No description |
PROSITE profile | PS51294 | 28.06 | 75 | 129 | IPR017930 | Myb domain |
SMART | SM00717 | 5.3E-18 | 79 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-16 | 80 | 124 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.83E-14 | 82 | 125 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-24 | 82 | 128 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MNGAPEGSGG TMRLKGVAGG AGTDDRIKGP WSPEEDVVLN RLVEKFGARN WSLIARGIPG 60 RSGKSCRLRW CNQLNPGVKR KPFTEEEDRA IVAAHAIHGN KWASIARMLP GRTDNAIKNH 120 WNSTLRRKHT GDDRGRKEGS SDGSEKGKED GSDTERIPPA REYDNDAGDD SGRDYDGEEF 180 AVSSDTPNSW PSRNSEKMTA GESMDERSHL RFDQSERDSE NDAQAQAGLK SSEEKPIRPT 240 PRPSAFFSYR KMVGNQGFVE VGSSSVSPPS HANDDGLSST SVSSFMPPFA TWSMPEAPGN 300 CGRGCCPPQS CDRPPETSIS PRGPLMGPDY VESADDGFPT NLPILSSMDD SFASLSDPGA 360 TSKLLSSIHA AVAEIVVPVL QRQMKQTTES FLVVDKESMS SSRLNLGLMR EVVAQEISRY 420 TGILVLDQSP Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-41 | 22 | 128 | 1 | 107 | B-MYB |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.3385 | 0.0 | gametophore |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024378460.1 | 0.0 | transcription factor MYB1-like | ||||
TrEMBL | A0A2K1KH07 | 0.0 | A0A2K1KH07_PHYPA; Uncharacterized protein | ||||
STRING | PP1S53_216V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 6e-59 | myb domain protein 109 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c6_24650V3.1.p |