PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_22030V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 368aa    MW: 40021.4 Da    PI: 6.9912
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_22030V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.5e-1792142256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr ++ +g Wv eIr p++   + r++lg+f tae+Aa+a++ a+++l+g+
  Pp3c6_22030V3.2.p  92 IYRGVRKRP-WGIWVTEIRRPKK---KSRIWLGSFATAEMAARAYDCAALALRGN 142
                        69*******.**********854...6*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-1291141IPR001471AP2/ERF domain
CDDcd000187.12E-3091149No hitNo description
SMARTSM003803.9E-3392155IPR001471AP2/ERF domain
PROSITE profilePS5103222.86692149IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-1992150IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.5E-3092150IPR001471AP2/ERF domain
PRINTSPR003672.3E-993104IPR001471AP2/ERF domain
PRINTSPR003672.3E-9115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MKLQASVYVK SCCSIVHKLL RSMSGASQKP GDIDGPNVGG NERSLDAVAG ADSGAYEQDD  60
SSERVEILTS SRKQEPEVRK KTKVEGDTRH PIYRGVRKRP WGIWVTEIRR PKKKSRIWLG  120
SFATAEMAAR AYDCAALALR GNGATLNFPK LVHSLPRLTD LSDKSIQAAA TIAANNFAHR  180
SEGSKCLEIA TSNLLLPAIS RVIKSDTDHQ QYEETYGAMQ AFKSTLLRPE TSSRISHDST  240
SNRGKISSNQ RREDTSSTSQ FAATGTGTNH KCNTDSSPSG TSTPDNVSNS SSRDQLTEKS  300
PQLVAGESIP DTPRVQQPMY VDADDVFTLG LTNLCDAMCI PPPDSEHATE TDGEEGSNTW  360
EPHLWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17901491272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024377803.10.0ethylene-responsive transcription factor 7-like
RefseqXP_024377804.10.0ethylene-responsive transcription factor 7-like
RefseqXP_024377805.10.0ethylene-responsive transcription factor 7-like
RefseqXP_024377806.10.0ethylene-responsive transcription factor 7-like
TrEMBLA0A2K1KGP00.0A0A2K1KGP0_PHYPA; Uncharacterized protein
STRINGPP1S14_458V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.13e-26ERF family protein