PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c6_22030V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 368aa MW: 40021.4 Da PI: 6.9912 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.5e-17 | 92 | 142 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr ++ +g Wv eIr p++ + r++lg+f tae+Aa+a++ a+++l+g+ Pp3c6_22030V3.1.p 92 IYRGVRKRP-WGIWVTEIRRPKK---KSRIWLGSFATAEMAARAYDCAALALRGN 142 69*******.**********854...6*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.3E-12 | 91 | 141 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.12E-30 | 91 | 149 | No hit | No description |
SMART | SM00380 | 3.9E-33 | 92 | 155 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.866 | 92 | 149 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-19 | 92 | 150 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.5E-30 | 92 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 93 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MKLQASVYVK SCCSIVHKLL RSMSGASQKP GDIDGPNVGG NERSLDAVAG ADSGAYEQDD 60 SSERVEILTS SRKQEPEVRK KTKVEGDTRH PIYRGVRKRP WGIWVTEIRR PKKKSRIWLG 120 SFATAEMAAR AYDCAALALR GNGATLNFPK LVHSLPRLTD LSDKSIQAAA TIAANNFAHR 180 SEGSKCLEIA TSNLLLPAIS RVIKSDTDHQ QYEETYGAMQ AFKSTLLRPE TSSRISHDST 240 SNRGKISSNQ RREDTSSTSQ FAATGTGTNH KCNTDSSPSG TSTPDNVSNS SSRDQLTEKS 300 PQLVAGESIP DTPRVQQPMY VDADDVFTLG LTNLCDAMCI PPPDSEHATE TDGEEGSNTW 360 EPHLWSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 90 | 149 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024377803.1 | 0.0 | ethylene-responsive transcription factor 7-like | ||||
Refseq | XP_024377804.1 | 0.0 | ethylene-responsive transcription factor 7-like | ||||
Refseq | XP_024377805.1 | 0.0 | ethylene-responsive transcription factor 7-like | ||||
Refseq | XP_024377806.1 | 0.0 | ethylene-responsive transcription factor 7-like | ||||
TrEMBL | A0A2K1KGP0 | 0.0 | A0A2K1KGP0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S14_458V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 3e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c6_22030V3.1.p |