PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c6_21840V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | AP2 | ||||||||
Protein Properties | Length: 456aa MW: 50842 Da PI: 6.5226 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.1 | 1.6e-16 | 69 | 128 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ k+++lg ++ +e Aa+a++ a++k++g Pp3c6_21840V3.2.p 69 SIYRGVTRHRWTGRYEAHLWDkSTWNEaqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 128 57*******************666666666446*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.3E-17 | 69 | 137 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.2E-12 | 69 | 128 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.126 | 70 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-25 | 70 | 142 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-15 | 70 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-5 | 71 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-5 | 118 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 8.979 | 172 | 232 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0013 | 172 | 238 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MEPTELKPNQ PSETGNEEAV PQRSGMVESP KGSPVQEHRG IKRYRRDRGS SAKERISKMP 60 ACVPGKRSSI YRGVTRHRWT GRYEAHLWDK STWNEAQNKK GKQVYLGAYD DEEAAARAYD 120 LAALKYWGPG TLINFPVTDY ARDVEEMQSV SREEYLASLR RKGSGFSRGS SKFKGVTRHP 180 SMGRWEARLG QVLGNKYLHW GNPGSNMSQE EAAAYDFQAL EYRSLNSGSN LDLSRYITWL 240 RPERAQTATT SYQPGADTTV SADTLSRMKE EEEGGASPTS WDDGPSQRDE GSQPEEQQRH 300 QAWPGQLSEP YQLPSLGVLH SNSHKKVTTP SALSLLLSSS IFKSMRERSS SLAVAAETDT 360 KYEPGLEFGD HSQYIQGLHM NRSLHDETTS DIFSPRLHYE MSNFPPSYGS SDRLGQLDEG 420 VVMSGADSQG PSFSDSPAYW DPFVQPLTSQ QLTSC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024379397.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A2K1KGM9 | 0.0 | A0A2K1KGM9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S14_439V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.2 | 1e-58 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c6_21840V3.2.p |