PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_21840V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 456aa    MW: 50842 Da    PI: 6.5226
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_21840V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-1669128155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  ++n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Pp3c6_21840V3.1.p  69 SIYRGVTRHRWTGRYEAHLWDkSTWNEaqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 128
                        57*******************666666666446*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.3E-1769137IPR016177DNA-binding domain
PfamPF008472.2E-1269128IPR001471AP2/ERF domain
PROSITE profilePS5103220.12670136IPR001471AP2/ERF domain
SMARTSM003802.6E-2570142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-1570137IPR001471AP2/ERF domain
PRINTSPR003674.7E-57182IPR001471AP2/ERF domain
PRINTSPR003674.7E-5118138IPR001471AP2/ERF domain
PROSITE profilePS510328.979172232IPR001471AP2/ERF domain
SMARTSM003800.0013172238IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MEPTELKPNQ PSETGNEEAV PQRSGMVESP KGSPVQEHRG IKRYRRDRGS SAKERISKMP  60
ACVPGKRSSI YRGVTRHRWT GRYEAHLWDK STWNEAQNKK GKQVYLGAYD DEEAAARAYD  120
LAALKYWGPG TLINFPVTDY ARDVEEMQSV SREEYLASLR RKGSGFSRGS SKFKGVTRHP  180
SMGRWEARLG QVLGNKYLHW GNPGSNMSQE EAAAYDFQAL EYRSLNSGSN LDLSRYITWL  240
RPERAQTATT SYQPGADTTV SADTLSRMKE EEEGGASPTS WDDGPSQRDE GSQPEEQQRH  300
QAWPGQLSEP YQLPSLGVLH SNSHKKVTTP SALSLLLSSS IFKSMRERSS SLAVAAETDT  360
KYEPGLEFGD HSQYIQGLHM NRSLHDETTS DIFSPRLHYE MSNFPPSYGS SDRLGQLDEG  420
VVMSGADSQG PSFSDSPAYW DPFVQPLTSQ QLTSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379397.10.0AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2K1KGM90.0A0A2K1KGM9_PHYPA; Uncharacterized protein
STRINGPP1S14_439V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.21e-58AP2 family protein