PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_21370V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ARF
Protein Properties Length: 776aa    MW: 85599.8 Da    PI: 6.4104
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_21370V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B382.44.3e-26131232199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d++g++W++++iyr++++r++lt+GW+ Fv++++L +gD+v+F   +
  Pp3c6_21370V3.2.p 131 FCKTLTASDTSTHGGFSVPRRAAEDClplldhSMNPPCQ-ELVAKDLHGKEWNFRHIYRGHPRRHLLTTGWSVFVSQKRLVAGDTVIFL--R 219
                        99*****************************97788885.9************************************************..4 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                         ++++l+v+v+r+
  Pp3c6_21370V3.2.p 220 GENGQLRVGVRRA 232
                        489999*****97 PP
2Auxin_resp107.91.1e-35257339183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+haa+++  F+v+YnPr+s+seFv++++k++k+ +++++vG+Rfkm+fe+++s err+sGt+v vsd+dp++WpnS Wrs+k
  Pp3c6_21370V3.2.p 257 ASHAATERLRFSVIYNPRTSPSEFVIPYHKYLKTKENNLTVGSRFKMKFESDESTERRYSGTIVEVSDADPLKWPNSAWRSMK 339
                        689*****************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-41124242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-39124237IPR015300DNA-binding pseudobarrel domain
CDDcd100173.41E-25129231No hitNo description
PROSITE profilePS5086313.592131233IPR003340B3 DNA binding domain
PfamPF023621.0E-23131232IPR003340B3 DNA binding domain
SMARTSM010191.8E-24131233IPR003340B3 DNA binding domain
PfamPF065071.8E-32257339IPR010525Auxin response factor
PROSITE profilePS5174523.873664747IPR000270PB1 domain
SuperFamilySSF542772.81E-8668742No hitNo description
PfamPF023099.5E-9674750IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MQYYGGMRGF DEGSTKMDEL DCELWHACAG PLTQLPPVDS HVMYWPQGHI EQVVACTPDS  60
AGAADVYQAS KQFSNLPAHL LCKISKIELQ ADPHTDEVFA QMDLTPQYET EFTKEMKDAP  120
PPTMQKNVRS FCKTLTASDT STHGGFSVPR RAAEDCLPLL DHSMNPPCQE LVAKDLHGKE  180
WNFRHIYRGH PRRHLLTTGW SVFVSQKRLV AGDTVIFLRG ENGQLRVGVR RASKQLPQTR  240
STHFSNANLH LGVLAAASHA ATERLRFSVI YNPRTSPSEF VIPYHKYLKT KENNLTVGSR  300
FKMKFESDES TERRYSGTIV EVSDADPLKW PNSAWRSMKV EWDESASERH ERVSPWEIEP  360
FVPISTLPTP SVGPRPKRRP PTFVTDSSPQ GTSQSVLDPQ QSNKLARILH SHDPRNELSI  420
GDDDDGDIES SRTSSLAVKQ EQPPRTGQQI WLQRPDVSSC GMSASPYSSP RLPSMAPFAP  480
LPADKTDLQL SVKSGSLDQT LSNDVSSVSC APYVGPGNHS TAAHHFREPS CNKILPSWLT  540
YPKSTDGTGV TSLPGSGRTQ LPITSLNNDP KLTPAQNLSF GSWDKVEQEK VHTSPALEQQ  600
CKLFGFNLVD KAVLAPVSSA PSHCEDSEGS GPWSSTDLTS PTSVDTHVSK LANGAYQPPT  660
VPVRSGTKVN YYGKFGRTVD LKKCDSYAAL RRMLATLFGL EGQLDDVTKG WQLVYTDHEN  720
DVLLVGDDPW EEFCNCVRSL KILSPQDAAG QNVGKLPMNN CDEDDDWLSA VQSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1211336112355Auxin response factor 1
4ldw_A1e-1211336112355Auxin response factor 1
4ldw_B1e-1211336112355Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.145540.0gametophore| protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024378381.10.0auxin response factor 25-like
TrEMBLA0A2K1KGM20.0A0A2K1KGM2_PHYPA; Auxin response factor
STRINGPP1S14_392V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-136auxin response factor 2