PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_21370V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ARF
Protein Properties Length: 757aa    MW: 83410.5 Da    PI: 6.7132
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_21370V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B382.44.2e-26112213199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d++g++W++++iyr++++r++lt+GW+ Fv++++L +gD+v+F   +
  Pp3c6_21370V3.1.p 112 FCKTLTASDTSTHGGFSVPRRAAEDClplldhSMNPPCQ-ELVAKDLHGKEWNFRHIYRGHPRRHLLTTGWSVFVSQKRLVAGDTVIFL--R 200
                        99*****************************97788885.9************************************************..4 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                         ++++l+v+v+r+
  Pp3c6_21370V3.1.p 201 GENGQLRVGVRRA 213
                        489999*****97 PP
2Auxin_resp107.91.1e-35238320183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+haa+++  F+v+YnPr+s+seFv++++k++k+ +++++vG+Rfkm+fe+++s err+sGt+v vsd+dp++WpnS Wrs+k
  Pp3c6_21370V3.1.p 238 ASHAATERLRFSVIYNPRTSPSEFVIPYHKYLKTKENNLTVGSRFKMKFESDESTERRYSGTIVEVSDADPLKWPNSAWRSMK 320
                        689*****************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-41105223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-39105218IPR015300DNA-binding pseudobarrel domain
CDDcd100173.21E-25110212No hitNo description
PROSITE profilePS5086313.592112214IPR003340B3 DNA binding domain
PfamPF023629.8E-24112213IPR003340B3 DNA binding domain
SMARTSM010191.8E-24112214IPR003340B3 DNA binding domain
PfamPF065071.8E-32238320IPR010525Auxin response factor
PROSITE profilePS5174523.873645728IPR000270PB1 domain
SuperFamilySSF542772.75E-8649723No hitNo description
PfamPF023099.2E-9655731IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MQYYGGMRGF DEGSTKMDEL DCELWHACAG PLTQLPPVDS HVMYWPQGHI EQVVACTPDS  60
AGAADVYQAS KQFSNLPAHL LCKISKIELQ TEFTKEMKDA PPPTMQKNVR SFCKTLTASD  120
TSTHGGFSVP RRAAEDCLPL LDHSMNPPCQ ELVAKDLHGK EWNFRHIYRG HPRRHLLTTG  180
WSVFVSQKRL VAGDTVIFLR GENGQLRVGV RRASKQLPQT RSTHFSNANL HLGVLAAASH  240
AATERLRFSV IYNPRTSPSE FVIPYHKYLK TKENNLTVGS RFKMKFESDE STERRYSGTI  300
VEVSDADPLK WPNSAWRSMK VEWDESASER HERVSPWEIE PFVPISTLPT PSVGPRPKRR  360
PPTFVTDSSP QGTSQSVLDP QQSNKLARIL HSHDPRNELS IGDDDDGDIE SSRTSSLAVK  420
QEQPPRTGQQ IWLQRPDVSS CGMSASPYSS PRLPSMAPFA PLPADKTDLQ LSVKSGSLDQ  480
TLSNDVSSVS CAPYVGPGNH STAAHHFREP SCNKILPSWL TYPKSTDGTG VTSLPGSGRT  540
QLPITSLNND PKLTPAQNLS FGSWDKVEQE KVHTSPALEQ QCKLFGFNLV DKAVLAPVSS  600
APSHCEDSEG SGPWSSTDLT SPTSVDTHVS KLANGAYQPP TVPVRSGTKV NYYGKFGRTV  660
DLKKCDSYAA LRRMLATLFG LEGQLDDVTK GWQLVYTDHE NDVLLVGDDP WEEFCNCVRS  720
LKILSPQDAA GQNVGKLPMN NCDEDDDWLS AVQSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1111334212355Auxin response factor 1
4ldw_A1e-1111334212355Auxin response factor 1
4ldw_B1e-1111334212355Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.145540.0gametophore| protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024378381.10.0auxin response factor 25-like
TrEMBLA0A2K1KGM20.0A0A2K1KGM2_PHYPA; Auxin response factor
STRINGPP1S14_392V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-126auxin response factor 2