PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_20480V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 551aa    MW: 59664.5 Da    PI: 6.8859
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_20480V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-19312362256
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        gy+GVr ++ +grW AeIrd       r r++lg+f+tae+Aa+a++ a+++l+g+
  Pp3c6_20480V3.3.p 312 GYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEDAARAYDSAARALRGA 362
                        8********.**********32....25*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.9E-13312361IPR001471AP2/ERF domain
PROSITE profilePS5103222.049312369IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-28312369IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-20312370IPR016177DNA-binding domain
SMARTSM003801.1E-30312375IPR001471AP2/ERF domain
PRINTSPR003676.6E-10313324IPR001471AP2/ERF domain
CDDcd000181.86E-29313368No hitNo description
PRINTSPR003676.6E-10335351IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MVLGISNLPP KRKWRDVSSE VPQKSDDGWR AGCDHTQVKR PWMTCLRCFG PTYHSLCDRC  60
VSPISSVPSM HSLGSLLETY VPLSSQQQSY NYFSGNEGQN HCVHNSLINA DGINSLTNFD  120
SDYREVDTSG DWSRASTSFL LERCGTVEGA GFFHNYQDLD GIAAVVGQNV LFGTSHSSEG  180
QNSYHGDLSA NASDPTFRNL YVHCLAPDKL SESLPSHGTN APTVDVSCGG GYRTGSLAPT  240
HFRSTLEDFE STSAHLLLNS VTSRFPQLDI LLPLNSGFGE SVGQSAGDSG TSTTIGTENA  300
TSAKAAGTTG RGYRGVRKRP WGRWSAEIRD RIGRCRHWLG TFDTAEDAAR AYDSAARALR  360
GAKAKTNFGV HSGTKSRTNN LSSNYPCALP SSTGFSSSMD HRQQDVKAPV PWITASRTSR  420
SIHLNRNSPD NETVLRFIQD DEYQRASKMF ISHPVMNNVK PVLEVDEGDR NDYVTRGGDA  480
ITAISKALDL NMGFRSSNSC SSLESTQEST PTYLQSPEKS VLSSSGAQYT SSNSGLSSDS  540
PTLSSGPWHV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-16303368571Ethylene-responsive transcription factor ERF096
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024377772.10.0uncharacterized protein LOC112283385
TrEMBLA0A2K1KGI40.0A0A2K1KGI4_PHYPA; Uncharacterized protein
STRINGPP1S14_303V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.13e-20ERF family protein