PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_20480V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 426aa    MW: 46501.6 Da    PI: 7.0596
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_20480V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-16312353247
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaai 47 
                        gy+GVr ++ +grW AeIrd       r r++lg+f+tae+Aa+a++
  Pp3c6_20480V3.1.p 312 GYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEDAARAYD 353
                        8********.**********32....25******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.88E-15312354IPR016177DNA-binding domain
PfamPF008471.0E-10312353IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-20312354IPR001471AP2/ERF domain
SMARTSM003803.2E-15312368IPR001471AP2/ERF domain
PROSITE profilePS5103218.36312379IPR001471AP2/ERF domain
PRINTSPR003674.2E-10313324IPR001471AP2/ERF domain
CDDcd000181.19E-21313353No hitNo description
PRINTSPR003674.2E-10335351IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MVLGISNLPP KRKWRDVSSE VPQKSDDGWR AGCDHTQVKR PWMTCLRCFG PTYHSLCDRC  60
VSPISSVPSM HSLGSLLETY VPLSSQQQSY NYFSGNEGQN HCVHNSLINA DGINSLTNFD  120
SDYREVDTSG DWSRASTSFL LERCGTVEGA GFFHNYQDLD GIAAVVGQNV LFGTSHSSEG  180
QNSYHGDLSA NASDPTFRNL YVHCLAPDKL SESLPSHGTN APTVDVSCGG GYRTGSLAPT  240
HFRSTLEDFE STSAHLLLNS VTSRFPQLDI LLPLNSGFGE SVGQSAGDSG TSTTIGTENA  300
TSAKAAGTTG RGYRGVRKRP WGRWSAEIRD RIGRCRHWLG TFDTAEDAAR AYDSGKPRGR  360
FEEPRPRPTS GCILELNREQ TTCLPIIRVH CHQVPDLAVP WIIDSRTSRL LFHGSQPAGR  420
QGLFI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024377772.10.0uncharacterized protein LOC112283385
TrEMBLA0A2K1KGI40.0A0A2K1KGI4_PHYPA; Uncharacterized protein
STRINGPP1S14_303V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.12e-17ERF family protein