PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_20180V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 974aa    MW: 107780 Da    PI: 7.1626
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_20180V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.8e-08500523327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        t+ Cr++ + G+C++Gd C+F H+p
  Pp3c6_20180V3.1.p 500 TSTCRYYNQ-GYCSRGDICPFLHDP 523
                        899******.*************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.225497524IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-4497523IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6500522IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5500523IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-6500523IPR000571Zinc finger, CCCH-type
PROSITE profilePS5030396.849634973IPR033133Pumilio homology domain
Gene3DG3DSA:1.25.10.103.7E-116642969IPR011989Armadillo-like helical
SuperFamilySSF483711.94E-103650968IPR016024Armadillo-type fold
SMARTSM000253.1E-5655690IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.757655690IPR001313Pumilio RNA-binding repeat
PfamPF008061.8E-5657689IPR001313Pumilio RNA-binding repeat
CDDcd079207.95E-140658968IPR033712Pumilio, RNA binding domain
SMARTSM000254.1E-11691726IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030212.63691726IPR001313Pumilio RNA-binding repeat
PfamPF008063.9E-11691725IPR001313Pumilio RNA-binding repeat
SMARTSM000259.2E-4729765IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.271729765IPR001313Pumilio RNA-binding repeat
PfamPF008062.1E-6730761IPR001313Pumilio RNA-binding repeat
SMARTSM000252.2E-5766801IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.317766801IPR001313Pumilio RNA-binding repeat
PfamPF008066.7E-6769800IPR001313Pumilio RNA-binding repeat
SMARTSM000251.3E-5802837IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.247802837IPR001313Pumilio RNA-binding repeat
PfamPF008061.8E-7806835IPR001313Pumilio RNA-binding repeat
SMARTSM000257.7838873IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.617838874IPR001313Pumilio RNA-binding repeat
PfamPF008061.5E-4843861IPR001313Pumilio RNA-binding repeat
SMARTSM000255.7874909IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503026.167882909IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.407910947IPR001313Pumilio RNA-binding repeat
SMARTSM000257.3912947IPR001313Pumilio RNA-binding repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 974 aa     Download sequence    Send to blast
MEQDDEEFEQ LLHEIPQATS PDTPNEVPRA TSAPPHLEEL QRMYEHNVDA HNFGLRPDEL  60
PVKPFIDIRC DEQYEDFYKS YSGAKKLPPP MDNRALYNDL PVLSPKASQL SYSLAGLQLD  120
SPRTRHRKHR QLEAQQKQVQ QQQQMFQQQR EPSPNRHSAA AHHFPNSPSN QMFGEPKMTS  180
AFGNLNFDGN ISRGLQSIPD DTGDSLSLSH GANAGLNGGN MAKTGQGSVE SNGIYGKMDA  240
FGVGSGGYGA GSGTSLETFT SRSPPPMDLF PRTSSAIDAL GNGLYNGMGD FSQVSSQAVE  300
KLLRQGSPGL NSYTAARGGE AYGSAVASPY EQQQQQQQQQ QQQQQQSEVL EAVHAATRVQ  360
AASAPVTDFY SPSSQQQILY DKDFSSIYEA QRLQAQMAAI RYAQAQAQME AQMEDEKRKQ  420
QQRLMIQQHQ QQLVDRQNQI LLASLQAQQT TYGRGGIAPT MSSMHNQVAL QKLRQQQMLE  480
GLWATQGLVP TASSRTTPAT STCRYYNQGY CSRGDICPFL HDPSGGSNRV CHTVPASLKE  540
AARSGQSTTV SRDERLPAYP EKILQRRSPR ASNGGSSSAS ISTVFCRKGD VLTNGHANGY  600
SNGHIVMGGT AHMPSPYIAD PQTHRAIQEN VEFDSGLSVA HHLQQQQPKY TKLEEVEGRI  660
YLIAKDQHGC RFLQKKFDEG GHEDVQKIFH EIIGHITELM KDPFGNYLVQ KLLEVCDESQ  720
RMEILRVVTM DGELVKISLN MHGTRAVQKL IETLKSPEQV TMVITALTEG VVELIKDLNG  780
NHVVQRCLQK LCHEDSQFIF DAAAAHCVEI ATHRHGCCVM QRCVDFASAP QKQRLVAVIA  840
ANALALSQDP YGNYVVQYIL DLKQGWATSE VMVRLEGSYA FLAMQKFSSN VVEKCLKLGM  900
EENRGRLVRE LTASSRLGQL LQDQYANYVI QSALSVCKGP LHAGLVDAIR PYLPALRNSP  960
YGKRILSRTN IKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dzs_A1e-7465396630350Pumilio homology domain family member 4
4dzs_B1e-7465396630350Pumilio homology domain family member 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024378813.10.0uncharacterized protein LOC112283823
RefseqXP_024378815.10.0uncharacterized protein LOC112283823
RefseqXP_024378816.10.0uncharacterized protein LOC112283823
RefseqXP_024378817.10.0uncharacterized protein LOC112283823
TrEMBLA0A2K1KGE70.0A0A2K1KGE7_PHYPA; Uncharacterized protein
STRINGPP1S14_277V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP82856