PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c6_19540V3.3.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C3H

Protein Properties

Length: 613aa MW: 65556.1 Da PI: 6.4524

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c6_19540V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	8e-06	567	589	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++ C +f+ + C+ G++C F H Pp3c6_19540V3.3.p 567 RKACLYFSTSRGCRNGSSCAFLH 589 678******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.033	564	592	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.0E-4	568	590	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence Send to blast
MAAVSSLPPG FEGAVAGTLP VQPVPETIVP NQARVSKKVS WASEDNLCQV RLFAAEDAPA 60 QSSIMLQDLL QAKKARFMHA LNPVVPVDLP PGFGPSMSMG TKPVIAAIFP SVPWRVPEHF 120 KLDPAWLVMA GGDSKEVFAQ KQRENRTLEA VYPRPSAIPE SPAEPSEVHL PFDSDDSNTL 180 IIPVVPLEDD ELPDVDEGLT PSDSTYERLQ ESFSGQKSVS PPPGFPSSST HVKSRNWFPE 240 APQDNNSFLL ATSTASAYGP PITISKNLVP PNGTAVQTMN TFNGRIGSMA LPARTTEGGT 300 EPDVAAATAA AYAALQQSND ATMIDRELLI KFLTNPSMLQ SLSEKLAQNP PGNHGVNRRN 360 PDSVDHNGMG ARGNGRVWNP TMTDQNKGGQ RYAEAPAVVE DLHTSHGYDR PPGFGAPPGT 420 NGLGQAPPQP GQGYGPSGSI PLSSISQLSA GYDQPAVSGS GRPISQRGEQ YYKDLISQHG 480 RKDEESVLGG AGAIDTGNSY RGVAWPKTIG PDRERRIESA ERTERSERPD SRARWAGRDV 540 VEMAALSVRQ GDSDQPSRLG QSRGKSRKAC LYFSTSRGCR NGSSCAFLHE VNNAERAKRP 600 KPEGKVNITG HI*

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence Send to blast

MAAVSSLPPG FEGAVAGTLP VQPVPETIVP NQARVSKKVS WASEDNLCQV RLFAAEDAPA  60
QSSIMLQDLL QAKKARFMHA LNPVVPVDLP PGFGPSMSMG TKPVIAAIFP SVPWRVPEHF  120
KLDPAWLVMA GGDSKEVFAQ KQRENRTLEA VYPRPSAIPE SPAEPSEVHL PFDSDDSNTL  180
IIPVVPLEDD ELPDVDEGLT PSDSTYERLQ ESFSGQKSVS PPPGFPSSST HVKSRNWFPE  240
APQDNNSFLL ATSTASAYGP PITISKNLVP PNGTAVQTMN TFNGRIGSMA LPARTTEGGT  300
EPDVAAATAA AYAALQQSND ATMIDRELLI KFLTNPSMLQ SLSEKLAQNP PGNHGVNRRN  360
PDSVDHNGMG ARGNGRVWNP TMTDQNKGGQ RYAEAPAVVE DLHTSHGYDR PPGFGAPPGT  420
NGLGQAPPQP GQGYGPSGSI PLSSISQLSA GYDQPAVSGS GRPISQRGEQ YYKDLISQHG  480
RKDEESVLGG AGAIDTGNSY RGVAWPKTIG PDRERRIESA ERTERSERPD SRARWAGRDV  540
VEMAALSVRQ GDSDQPSRLG QSRGKSRKAC LYFSTSRGCR NGSSCAFLHE VNNAERAKRP  600
KPEGKVNITG HI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024379133.1	0.0	zinc finger CCCH domain-containing protein 30-like
TrEMBL	A0A2K1KGB5	0.0	A0A2K1KGB5_PHYPA; Uncharacterized protein
STRING	PP1S14_212V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c6_19540V3.3.p