PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_16660V3.2.p
Common NamePHYPADRAFT_195459
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 200aa    MW: 22365.5 Da    PI: 4.7411
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_16660V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23e-161359151
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaark 51
                       s+y+GVr ++ +g+Wv+eIrdp        kr++lg+f t+ eAa a +aa++
  Pp3c6_16660V3.2.p 13 SQYRGVRMRR-WGKWVSEIRDP-----ImkKRIWLGSFRTEAEAAHAFDAAAL 59
                       78*****998.**********7.....447**********99*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.48E-161373No hitNo description
PfamPF008474.4E-91360IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-181373IPR016177DNA-binding domain
SMARTSM003801.2E-251478IPR001471AP2/ERF domain
PROSITE profilePS5103219.7041472IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-271473IPR001471AP2/ERF domain
PRINTSPR003679.6E-91526IPR001471AP2/ERF domain
PRINTSPR003679.6E-93753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSERNRRSDT SSSQYRGVRM RRWGKWVSEI RDPIMKKRIW LGSFRTEAEA AHAFDAAALM  60
CLRNPMSQLN FPHYSYIIPS GSAGCFSTRE IQAAAAATAA ASAGRSFSYN GFTQSSTSAS  120
SDSDDAQEIE DITYDEHQRY THPSVPSYSC SSYARSWSNF DEDIDLVSEM ARGMLMQPPA  180
PDDDDDGDYN YPGPLYLWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-12181180Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.70260.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024377594.11e-147ethylene-responsive transcription factor ERF017-like
TrEMBLA9TIU01e-145A9TIU0_PHYPA; Predicted protein
STRINGPP1S240_84V6.11e-146(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06746.13e-16related to AP2 9
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]