PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c6_15220V3.13.p | ||||||||
Common Name | PHYPADRAFT_168958 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 1202aa MW: 129596 Da PI: 7.1048 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.7 | 5.5e-10 | 14 | 36 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 Cr++a +GtC +Gd+C+FaH p Pp3c6_15220V3.13.p 14 TCRYWATSGTCFFGDQCNFAHNP 36 7********************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.366 | 9 | 37 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 10 | 36 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 12 | 38 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-7 | 14 | 36 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.1E-8 | 15 | 38 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.352 | 47 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3 | 49 | 75 | IPR000571 | Zinc finger, CCCH-type |
Hamap | MF_03181 | 25.063 | 519 | 1171 | IPR030844 | PAB-dependent poly(A)-specific ribonuclease subunit PAN3 |
PROSITE profile | PS50011 | 9.234 | 793 | 1100 | IPR000719 | Protein kinase domain |
CDD | cd00180 | 4.16E-10 | 803 | 951 | No hit | No description |
SuperFamily | SSF56112 | 1.04E-12 | 805 | 1023 | IPR011009 | Protein kinase-like domain |
Gene3D | G3DSA:3.30.200.20 | 6.4E-4 | 809 | 868 | No hit | No description |
Gene3D | G3DSA:1.10.510.10 | 4.6E-6 | 869 | 964 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000289 | Biological Process | nuclear-transcribed mRNA poly(A) tail shortening | ||||
GO:0006397 | Biological Process | mRNA processing | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0031251 | Cellular Component | PAN complex | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0044822 | Molecular Function | poly(A) RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1202 aa Download sequence Send to blast |
MSASPHKPPP SNVTCRYWAT SGTCFFGDQC NFAHNPADRA ASGRSVPKRE KACKELLLTG 60 YCKNEKNGCE YNHEIPGVIR AGPPSASSST TTNVAASPVF SSWPSTTSTT LSPGRTAAAI 120 RNNRLPVSAP AFVPAAVAAA QRASLSAWGG VTPGSGKRTA VTSQTTLTST SPTQNDIISV 180 SSGQTSVDAQ TTSDLAALVQ KAEVRIAPVT VSSGVSVSTP LSSTFSNSLL NAQPFIPSLS 240 SANSGSSNGP TQGASVGSAN ATPFVPSGGS VASAISAAPF IPRSRQHLVT GATTGGVPAS 300 IDRALQPANQ SLVALDGSVP QQQLQMRQQL SPQMQQQIQH QAAAQAQVQA QAQAQAQAQA 360 QMLAAAARSM GGNVLNNNQY VGMEVPMVIP SFRLPDGDDP ALGMTAMSPP NPAFLARVGG 420 SGDLSVLPPS DAMTSMGIVG DESGVLQVDS SSPFAHNYGG GLPSLSFVRA QLHQHMQNLQ 480 LQQQHQVFSG QSSLYSLRPP QRTGAQTPEK QQQQQMLSTQ SEQQSQSPPY SLRVSQSLGA 540 QTAEKSLFLG SQAEGSGFVP SSLALLSEKQ VQEHMSPSPE RQESDQLSMQ SSESNGPQQS 600 TQQSGQIQNS QQQSSLEQHH HQQQVQIQQH LQLQALQQQQ MRHRMQQQSH QSQQSQQPQH 660 FQQQAQGQRT LSGTGYSQQR LPSMRSASPV SGVSTVAAAT HGGATYFLGP GQGISSLSHA 720 FSSPNSRNES RSARSQFPAG TAPLGSRFIS DQLREELRRR HTLIHAQLDP EQDLVDLPEM 780 VQRFHSLYPL EDVNRDDDIP STSFGVRTMV FKGISSLDGQ AYAIRRIDGR QVIPTVELAA 840 TAIEAVERWA PFTRHPHIVA IRESFVSREV EDTPALFFVH DYYPAAYTLQ SMHLQQEQAG 900 GVVHLTVSEE QLWSYMVQLA TVLRAVHGAG LYFRPGGLHP SKIIVTSKGR IRVSSVGILD 960 VLHGDPADEV RVFQKEDLAG CGRLVLALAC GSTANASLEF MGSHYSNEIV RVTQHLLASS 1020 PEKSEGVGFS NIRQLHSFLA DRMFSEIENV HMQNDEIMTE LSKEAENGRL LRILVKLGMM 1080 NERPETDMDP GWSENGDRYL LKLFRDFVFH QTSEEGTPVI DWGHVIECLN KLDAGVPEKL 1140 ILLSRDERSM LIASYADLKR CLENVYQELL ARASGDKGRV ALPQSMLVQS QARLSQRLHA 1200 S* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4bwp_A | 2e-74 | 751 | 1175 | 9 | 448 | PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN-3 |
4bwp_B | 2e-74 | 751 | 1175 | 9 | 448 | PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN-3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppa.17077 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024378276.1 | 0.0 | PAN2-PAN3 deadenylation complex subunit pan3-like isoform X2 | ||||
TrEMBL | A0A2K1KFQ3 | 0.0 | A0A2K1KFQ3_PHYPA; PAN2-PAN3 deadenylation complex subunit PAN3 | ||||
STRING | PP1S195_2V6.1 | 0.0 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c6_15220V3.13.p |
Entrez Gene | 5938930 |
Publications ? help Back to Top | |||
---|---|---|---|
|