PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c6_14880V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 712aa MW: 77503.4 Da PI: 5.3256 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.1 | 3.3e-16 | 81 | 131 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d + ++ r +lg+f++aee aka++ a+++l+g+ Pp3c6_14880V3.2.p 81 RFVGVRQRP-SGRWVAEIKDTT---QKIRLWLGTFDSAEEGAKAYDSAARALRGA 131 789******.7*********32...35*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.24E-28 | 80 | 137 | No hit | No description |
PROSITE profile | PS51032 | 19.045 | 81 | 138 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-10 | 81 | 130 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-25 | 81 | 137 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-29 | 81 | 144 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-17 | 81 | 138 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.7E-6 | 82 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-6 | 104 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 712 aa Download sequence Send to blast |
MSSGSNASRK PSVTSTLFKA SSRFLHGSTG NGQAAGGKSM KRQRAGASID KEVLSAESNN 60 TPDTALDDHK DTSGGAKSKK RFVGVRQRPS GRWVAEIKDT TQKIRLWLGT FDSAEEGAKA 120 YDSAARALRG ANTRTNFVPG MACESTVPAS KATRLIRLRQ IAAASKASEK EARNVTQSPE 180 PKDHLRRSQD DSKDQVISPL VRQDFQHSSN PRTAVDDTPP HLPSSPPKPA RLIGRRHNAP 240 LTSAKADQED VAPNPTDNDR SAVDRGPKLE VGSFPSPDRS PPKLEPQQSI ISENPSNAKN 300 QRLIASLQDS SPTLLRLSLP SCSIPQDCIQ PQNLADGEAQ LVSSGLSEVA VTNVKFSKQT 360 HYSTQRAEEW HGSSPFESFS TLPVDNFVPQ SPNPFLIVPL EASRQQFRTD HNMSGLVGCS 420 HHDASSQQQL SCSTNRDHVS IYQSERYGDL DPGMSNNNAI LDRQRSLRSI AQHLNSDDAM 480 TLDAAKCMME PKCCEPLASS VPKGQMDYTN TEMYGTESEK RSPEICDLRE KGFSNLHGPD 540 IPWQDYIWGD TTGMESGLLG LDLSCESSGV YNSTFDFTET IERDSCTSVV EEHLSDNSDF 600 MLRVQFDSSP CTSDSFQECV LLTQPDYCMS PHESSLRGLP LSPPDTHLSN SSPSLWRVND 660 TSTWDGQSSG STETTTTTDL KTDGDGAGEC TSQDHEALWS SMDLPPLCMV A* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024377779.1 | 0.0 | uncharacterized protein LOC112283392 | ||||
TrEMBL | A0A2K1KFL8 | 0.0 | A0A2K1KFL8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S195_38V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 9e-28 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c6_14880V3.2.p |