PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_9420V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ARF
Protein Properties Length: 772aa    MW: 85207.2 Da    PI: 5.858
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_9420V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B381.58.5e-26134235199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ aee+      +++++++ +l+ +d++g+ W++++iyr++++r++lt+GW+ Fv++++L +gD+v+F   + 
  Pp3c5_9420V3.1.p 134 FCKTLTASDTSTHGGFSVPRRAAEEClplldhNMVPPCQ-ELVAKDLHGKDWSFRHIYRGHPRRHLLTTGWSVFVSQKRLVAGDTVIFL--RG 223
                       99*****************************98898886.9************************************************..44 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       ++++l+v+v+r+
  Pp3c5_9420V3.1.p 224 ENGQLRVGVRRA 235
                       89999*****97 PP
2Auxin_resp107.41.6e-35260342183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+haa+++  F+v+YnPr+s+seFv++++k++++ +++++vG+Rfkm+fete+s err+sGt+v +sd+dp++Wp S Wrs+k
  Pp3c5_9420V3.1.p 260 ASHAATERLRFSVIYNPRTSPSEFVIPYHKYLRSEDNNLTVGSRFKMKFETEESTERRYSGTIVEISDVDPLKWPSSAWRSMK 342
                       689*****************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.45E-39127243IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-41128245IPR015300DNA-binding pseudobarrel domain
CDDcd100173.61E-24132234No hitNo description
SMARTSM010193.3E-23134236IPR003340B3 DNA binding domain
PROSITE profilePS5086313.352134236IPR003340B3 DNA binding domain
PfamPF023624.2E-23134235IPR003340B3 DNA binding domain
PfamPF065074.7E-32260342IPR010525Auxin response factor
PROSITE profilePS5174525.374660744IPR000270PB1 domain
SuperFamilySSF542776.38E-9664737No hitNo description
CDDcd059921.31E-5664737No hitNo description
PfamPF023093.3E-8666746IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MHYGGMHGGM RSFDEGATKM DELNCELWHA CAGPLTQLPP VDSLVMYWPQ GHIEQVVACT  60
PDSAGAADVY QASKQFSNLP AHLLCRISKI ELQADPQTDE VFAQMDLTPQ YETELSKETK  120
DAPSPIQQSN VRSFCKTLTA SDTSTHGGFS VPRRAAEECL PLLDHNMVPP CQELVAKDLH  180
GKDWSFRHIY RGHPRRHLLT TGWSVFVSQK RLVAGDTVIF LRGENGQLRV GVRRASKQQP  240
QARSTHFSSA NLHLGVLAAA SHAATERLRF SVIYNPRTSP SEFVIPYHKY LRSEDNNLTV  300
GSRFKMKFET EESTERRYSG TIVEISDVDP LKWPSSAWRS MKVEWDESAS ERHERVSPWE  360
IEPLVPISTL PTPPVGPRPK RRPPTFVTDS ATLGPSQSVL DPFQSNKLAR VLHSHDPRNE  420
PSIGDDDDGD AESSRTSSLV VKQEPPPRNG HQIWLQRSDV ASYGIPPSPY VNRRLSSVPP  480
FAAPLPENTT ELQLSVNSGS LDQAPSNEDS SVSWASYMGT GAYQFRDPSC NKILPSWLTN  540
SKSANLTSPP VPARSQLPIT SLNNDPKVLH AHNLSFELWE TVEQEQLNAS PALEQQCKLF  600
GFNLADKVVP TPVSSAPSLC EDSEGSGPWS SSDHTSSTSA DTRVGMIVTG TYQPLVAPVR  660
SGTKVYYSGK VGRTIDLKKC ESYAALRRML ASLFGLEGQL DDVTKGWQLV YTDHENDVLL  720
VGDDPWEEFC NCVRSLKVLS PQDAAGQSVG KYPMTNCDED DDWQSAVQSS G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1201636412355Auxin response factor 1
4ldw_A1e-1201636412355Auxin response factor 1
4ldw_B1e-1201636412355Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376788.10.0auxin response factor 17-like
RefseqXP_024376789.10.0auxin response factor 17-like
TrEMBLA0A2K1KJ240.0A0A2K1KJ24_PHYPA; Auxin response factor
STRINGPP1S64_138V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-130auxin response factor 2