PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_889V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | HB-other | ||||||||
Protein Properties | Length: 114aa MW: 12962.8 Da PI: 11.1235 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.5 | 2.2e-08 | 47 | 107 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC...TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl...gLterqVkvWFqNrRakekk 57 +rkRt++t+eq e ++++ e ++ +++e +A+ + g+t + k+W +N ++k k+ Pp3c5_889V3.1.p 47 KRKRTQLTDEQREKMKSYAEHaGWTIVGQRKENIAAACkdiGVTPKTLKYWIHNAKQKLKR 107 79**************99998899**********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.93E-14 | 34 | 107 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.8E-22 | 34 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.446 | 44 | 108 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 1.9E-21 | 47 | 103 | IPR006455 | Homeodomain, ZF-HD class |
Pfam | PF00046 | 5.5E-6 | 47 | 107 | IPR001356 | Homeobox domain |
CDD | cd00086 | 0.00127 | 47 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MNKEHRRRAQ LQLSPSHLHI QSNLLQVDRI SAPNGQAQNG SHPGKPKRKR TQLTDEQREK 60 MKSYAEHAGW TIVGQRKENI AAACKDIGVT PKTLKYWIHN AKQKLKRSHD QAL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024375088.1 | 2e-79 | zinc-finger homeodomain protein 3-like | ||||
Refseq | XP_024375488.1 | 5e-76 | uncharacterized protein LOC112282289 | ||||
TrEMBL | A0A2K1KHY5 | 1e-74 | A0A2K1KHY5_PHYPA; Uncharacterized protein | ||||
TrEMBL | A0A2K1KI08 | 4e-78 | A0A2K1KI08_PHYPA; Uncharacterized protein | ||||
STRING | PP1S259_102V6.1 | 2e-75 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 4e-14 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_889V3.1.p |