PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_880V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 577aa    MW: 62230.5 Da    PI: 5.9989
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_880V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19241290255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     + +r++lg+f taeeAa a+++a+ +++g
  Pp3c5_880V3.1.p 241 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFNTAEEAAMAYDKAAIRFRG 290
                      7********.**********93....36************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.48E-34241299No hitNo description
SuperFamilySSF541711.9E-22241299IPR016177DNA-binding domain
PfamPF008471.3E-13241290IPR001471AP2/ERF domain
PROSITE profilePS5103225.014241298IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-32241299IPR001471AP2/ERF domain
SMARTSM003801.3E-35241304IPR001471AP2/ERF domain
PRINTSPR003672.8E-11242253IPR001471AP2/ERF domain
PRINTSPR003672.8E-11264280IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MCWLQALPGR SRLLHKLDPP SDPPDTSGSS SPKWAGVRPG SASEVSLMVS ALTQAGVARP  60
DQAFTGSQHP ENIPQDAAIT CRKRHRDSPT RELVSHAETR SEQAPSMLST KHKVDASMGI  120
KEQKIGATAY VNVTEASAVT WAPVLLDATG EESERFGTHS TSPSLTQDTF PSQDQVGRIS  180
DFSRPLHLST PTNEDAPRPW GGNLEQLDQA GIGDGSHLQG AREEGPSETQ ELSVPPTKKR  240
RYRGVRQRPW GKWAAEIRDP QKAARVWLGT FNTAEEAAMA YDKAAIRFRG LRAKLNFPDG  300
IIPPTASAVG STTASQPDSS SISISATTPS TCTSSSSQFS GHSTQPAPVS RSFRSISSVA  360
GASVPFHSSP LASIPSHQMS SVTAAPEAYE PYPRSTGLLQ PGGGSSGSNQ SGPHQGLRPS  420
QQPLIYPQWS RPKSRSDQSL DPVQPQNSQT SRQYPELTSP TLNLEHEDLY ADELHDPILH  480
YDQYRLGTPF SVDYRRSNVV FDPGGQGFPP SQPQALPVVN YNLSVSSANP SPYVELSYDQ  540
IFDQPGELQS TFPEIASPSG QLPFDSFEDD PYLGQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-23238298263ATERF1
3gcc_A1e-23238298263ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375087.10.0uncharacterized protein LOC112282101
TrEMBLA0A2K1KHZ00.0A0A2K1KHZ0_PHYPA; Uncharacterized protein
STRINGPP1S259_104V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-24ethylene response factor 110