PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_860V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 451aa MW: 49074.7 Da PI: 7.9348 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 69.2 | 7.1e-22 | 157 | 210 | 2 | 57 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++v+YkeC+kN+A ++ h vDGCgEfm g+e ++al+C ACgCHR++HR Pp3c5_860V3.2.p 157 CTVVYKECQKNQALDTANHCVDGCGEFMRR-GRE-GQEALQCMACGCHRSYHRSVL 210 789**************************9.666.479***************865 PP | |||||||
2 | Homeobox | 21.8 | 3.1e-07 | 384 | 444 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC...TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl...gLterqVkvWFqNrRakekk 57 +rkRt++t+eq e ++++ e ++ +++e +A+ + g+t + k+W +N ++k k+ Pp3c5_860V3.2.p 384 KRKRTQLTDEQREKMKSYAEHaGWTIVGQRKENIAAACkdiGVTPKTLKYWIHNAKQKLKR 444 79**************99998899**********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 9.7E-20 | 159 | 208 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.4E-18 | 161 | 208 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-11 | 161 | 210 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 20.196 | 161 | 209 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.44E-13 | 371 | 444 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 371 | 445 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.446 | 381 | 445 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.66E-5 | 384 | 446 | No hit | No description |
Pfam | PF00046 | 7.9E-5 | 384 | 444 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 2.5E-20 | 384 | 440 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MNYNCDRRGG YGDSAEEAAN LFLAASTRNP WQVGPMNPVI SAGHHAGNVT NCNAASAGDA 60 GTAQGAILFQ GFLGGRGYGG SLQPSSAALH ARWDLNPVQP GENQTSGNQR DDQEQAKWAN 120 QNTTSRFRGQ LDEDDLLGFS MDQRSAQPNL QAKSGTCTVV YKECQKNQAL DTANHCVDGC 180 GEFMRRGREG QEALQCMACG CHRSYHRSVL VGDNGKELDT IGEVDAVQPR LINNDLHLSL 240 SRIETVALNL MEATGRALPL LAADHPPRGS DDLATKELDT VMKISIENLD HISKVTLSTV 300 ECIGILQTAA STQQSASSRD RPSVPDHGRL SSEVSPVMNK EHRRRAQLQL SPSHLHIQSN 360 LLQVDRISAP NGQAQNGSHP GKPKRKRTQL TDEQREKMKS YAEHAGWTIV GQRKENIAAA 420 CKDIGVTPKT LKYWIHNAKQ KLKRSHDQAL * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024375488.1 | 0.0 | uncharacterized protein LOC112282289 | ||||
TrEMBL | A0A2K1KHY5 | 0.0 | A0A2K1KHY5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S259_102V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 9e-15 | homeobox protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_860V3.2.p |