PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_860V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ZF-HD
Protein Properties Length: 451aa    MW: 49074.7 Da    PI: 7.9348
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_860V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer69.27.1e-22157210257
      ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                      ++v+YkeC+kN+A ++  h vDGCgEfm   g+e  ++al+C ACgCHR++HR   
  Pp3c5_860V3.1.p 157 CTVVYKECQKNQALDTANHCVDGCGEFMRR-GRE-GQEALQCMACGCHRSYHRSVL 210
                      789**************************9.666.479***************865 PP
2Homeobox21.83.1e-07384444157
                      TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC...TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl...gLterqVkvWFqNrRakekk 57 
                      +rkRt++t+eq e ++++ e    ++  +++e +A+ +   g+t +  k+W +N ++k k+
  Pp3c5_860V3.1.p 384 KRKRTQLTDEQREKMKSYAEHaGWTIVGQRKENIAAACkdiGVTPKTLKYWIHNAKQKLKR 444
                      79**************99998899**********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.7E-20159208IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.4E-18161208IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-11161210IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.196161209IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.44E-13371444IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-20371445IPR009057Homeodomain-like
PROSITE profilePS5007110.446381445IPR001356Homeobox domain
CDDcd000865.66E-5384446No hitNo description
PfamPF000467.9E-5384444IPR001356Homeobox domain
TIGRFAMsTIGR015652.5E-20384440IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MNYNCDRRGG YGDSAEEAAN LFLAASTRNP WQVGPMNPVI SAGHHAGNVT NCNAASAGDA  60
GTAQGAILFQ GFLGGRGYGG SLQPSSAALH ARWDLNPVQP GENQTSGNQR DDQEQAKWAN  120
QNTTSRFRGQ LDEDDLLGFS MDQRSAQPNL QAKSGTCTVV YKECQKNQAL DTANHCVDGC  180
GEFMRRGREG QEALQCMACG CHRSYHRSVL VGDNGKELDT IGEVDAVQPR LINNDLHLSL  240
SRIETVALNL MEATGRALPL LAADHPPRGS DDLATKELDT VMKISIENLD HISKVTLSTV  300
ECIGILQTAA STQQSASSRD RPSVPDHGRL SSEVSPVMNK EHRRRAQLQL SPSHLHIQSN  360
LLQVDRISAP NGQAQNGSHP GKPKRKRTQL TDEQREKMKS YAEHAGWTIV GQRKENIAAA  420
CKDIGVTPKT LKYWIHNAKQ KLKRSHDQAL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375488.10.0uncharacterized protein LOC112282289
TrEMBLA0A2K1KHY50.0A0A2K1KHY5_PHYPA; Uncharacterized protein
STRINGPP1S259_102V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.19e-15homeobox protein 24