PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_8580V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 694aa    MW: 75102.2 Da    PI: 5.3228
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_8580V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.2e-1681131256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       ++ GVr+++ +grWvAeI+d +   ++ r +lg+f++aee aka++ a+++l+g+
  Pp3c5_8580V3.4.p  81 RFVGVRQRP-SGRWVAEIKDTT---QKIRLWLGTFDSAEEGAKAYDSAARALRGA 131
                       789******.7*********32...35*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.72E-2880137No hitNo description
PfamPF008471.5E-1081130IPR001471AP2/ERF domain
PROSITE profilePS5103219.04581138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-2581137IPR001471AP2/ERF domain
SMARTSM003801.8E-3081144IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1781138IPR016177DNA-binding domain
PRINTSPR003679.3E-68293IPR001471AP2/ERF domain
PRINTSPR003679.3E-6104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MSSVSNAPRK SNVASTLFKA SSRFLHGGTS NGQGAGGKSM KRHRACALLD KEAVTAENSD  60
VQDTALNELK DSSAGTKTKK RFVGVRQRPS GRWVAEIKDT TQKIRLWLGT FDSAEEGAKA  120
YDSAARALRG ANTRTNFVPA VANEGTVPAS KAARLIRLRQ IAAASKACEN EPPNVTQPQE  180
QNDPNLGKIQ DEGNDRLIST PKRQDIQPSS NLRTALGDNP PHLPSSPRKP ARLISHRSNA  240
PSVNAKPEQE GDAPLPVITD RGAVDCDLKV KVGDFLSPHC SSSKLEPQQS ITSENLSTAI  300
NRSLTVSPQD PPTRPSSPPS LSSFRIPFDG MQPISLADGD AHLVNSGLAE AAATDLKFNK  360
QTIFPTQIVE EWQRLLSCES YLALAVDNFM ALPPISLHVA PLEASMQLFR SDHNVSDFAA  420
STQHGGSSQH HIPCTTNRDL VTIYPPARYS DLNPRMSNGN EIPYRASVSR QVNSDDAMSM  480
DASKSVTETK CCKPASTVPK EEINYGSAEI HGVETERIVQ ERYAYREKEF PELLVLDHMP  540
WSEYGWGDET GMESGLLGLN LSSENSEVYT PAFDFSAETI DRDSCTNVPS RSNSFQECVE  600
LTKHSELDYS MSPHESSLSS PQLSPPATHL SMSSSDLWSL NDTSAWDGQS SGSTETITSS  660
DIKSGGDGNG ECTSQDHEAL WSSMDLPPLC MVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.171480.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376422.10.0uncharacterized protein LOC112282694
RefseqXP_024376423.10.0uncharacterized protein LOC112282694
TrEMBLA0A2K1KIZ50.0A0A2K1KIZ5_PHYPA; Uncharacterized protein
STRINGPP1S64_47V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-29related to AP2 11