PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_8580V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 694aa MW: 75102.2 Da PI: 5.3228 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.2 | 3.2e-16 | 81 | 131 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d + ++ r +lg+f++aee aka++ a+++l+g+ Pp3c5_8580V3.3.p 81 RFVGVRQRP-SGRWVAEIKDTT---QKIRLWLGTFDSAEEGAKAYDSAARALRGA 131 789******.7*********32...35*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.72E-28 | 80 | 137 | No hit | No description |
Pfam | PF00847 | 1.5E-10 | 81 | 130 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 81 | 138 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-25 | 81 | 137 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-30 | 81 | 144 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-17 | 81 | 138 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.3E-6 | 82 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-6 | 104 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence Send to blast |
MSSVSNAPRK SNVASTLFKA SSRFLHGGTS NGQGAGGKSM KRHRACALLD KEAVTAENSD 60 VQDTALNELK DSSAGTKTKK RFVGVRQRPS GRWVAEIKDT TQKIRLWLGT FDSAEEGAKA 120 YDSAARALRG ANTRTNFVPA VANEGTVPAS KAARLIRLRQ IAAASKACEN EPPNVTQPQE 180 QNDPNLGKIQ DEGNDRLIST PKRQDIQPSS NLRTALGDNP PHLPSSPRKP ARLISHRSNA 240 PSVNAKPEQE GDAPLPVITD RGAVDCDLKV KVGDFLSPHC SSSKLEPQQS ITSENLSTAI 300 NRSLTVSPQD PPTRPSSPPS LSSFRIPFDG MQPISLADGD AHLVNSGLAE AAATDLKFNK 360 QTIFPTQIVE EWQRLLSCES YLALAVDNFM ALPPISLHVA PLEASMQLFR SDHNVSDFAA 420 STQHGGSSQH HIPCTTNRDL VTIYPPARYS DLNPRMSNGN EIPYRASVSR QVNSDDAMSM 480 DASKSVTETK CCKPASTVPK EEINYGSAEI HGVETERIVQ ERYAYREKEF PELLVLDHMP 540 WSEYGWGDET GMESGLLGLN LSSENSEVYT PAFDFSAETI DRDSCTNVPS RSNSFQECVE 600 LTKHSELDYS MSPHESSLSS PQLSPPATHL SMSSSDLWSL NDTSAWDGQS SGSTETITSS 660 DIKSGGDGNG ECTSQDHEAL WSSMDLPPLC MVA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.17148 | 0.0 | protonema |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024376422.1 | 0.0 | uncharacterized protein LOC112282694 | ||||
Refseq | XP_024376423.1 | 0.0 | uncharacterized protein LOC112282694 | ||||
TrEMBL | A0A2K1KIZ5 | 0.0 | A0A2K1KIZ5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S64_47V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 8e-29 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_8580V3.3.p |