PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_810V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 282aa    MW: 30343.7 Da    PI: 4.8518
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_810V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-175099255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr +  +g+Wv eIrdp +   r+r++lg+f tae+Aa+a++aa  +l+g
  Pp3c5_810V3.1.p 50 TYRGVRMRA-WGKWVTEIRDPAS---RTRIWLGSFSTAEMAARAYDAAVVCLKG 99
                     69****998.**********843...4*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.51E-2949110No hitNo description
SMARTSM003804.7E-3350114IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1950110IPR016177DNA-binding domain
PROSITE profilePS5103222.28650108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-2950109IPR001471AP2/ERF domain
PfamPF008475.8E-105097IPR001471AP2/ERF domain
PRINTSPR003673.4E-105162IPR001471AP2/ERF domain
PRINTSPR003673.4E-107389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEEKKRSTPL VLKRNGQVLG IKKPAAGSIS KKQNSHALGN TCTSSSPPCT YRGVRMRAWG  60
KWVTEIRDPA SRTRIWLGSF STAEMAARAY DAAVVCLKGP SAPELNFPNS LPNFIPEVRS  120
PKDIQAAAAA AATASVSPAI PLAVGTAPPT QTQALNDVQD ELADELTSMI SSASSEQDSN  180
NMAFGEDAIA AFQEQPNSSP SSSSSTITSA VEAFVNWEFA EYEESKHHGI DLCQGLMRGD  240
SNVIEFYYPR INGNSQDDKV GWNTASYDFS VAYEQSLWCF S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-14511111575Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375195.10.0ethylene-responsive transcription factor ERF014-like
TrEMBLA0A2K1KHX30.0A0A2K1KHX3_PHYPA; Uncharacterized protein
STRINGPP1S259_94V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.13e-29ERF family protein