PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_7650V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB | ||||||||
Protein Properties | Length: 1350aa MW: 148148 Da PI: 6.8518 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.8e-16 | 598 | 644 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd lv +v+++G +W++Ia ++ gR +kqc++rw+++l Pp3c5_7650V3.1.p 598 KGQWSPEEDRYLVGLVEMHGQQRWSLIATQLP-GRIGKQCRERWHNHL 644 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3e-17 | 650 | 692 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r+ W teE+e lv a+++lG++ W+ Ia++++ gRt++ +k++w+ Pp3c5_7650V3.1.p 650 RDGWNTEEEEALVSAHNKLGNR-WADIAKMIP-GRTENAIKNHWN 692 567*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.718 | 593 | 648 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.95E-29 | 595 | 691 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-15 | 597 | 646 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-27 | 599 | 651 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.5E-17 | 601 | 661 | No hit | No description |
CDD | cd00167 | 3.08E-13 | 601 | 644 | No hit | No description |
SMART | SM00717 | 8.7E-16 | 649 | 697 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.42 | 649 | 699 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-20 | 652 | 698 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.47E-12 | 653 | 692 | No hit | No description |
Gene3D | G3DSA:3.90.1170.40 | 2.8E-9 | 1261 | 1339 | IPR003448 | Molybdopterin biosynthesis MoaE |
Pfam | PF02391 | 4.1E-8 | 1264 | 1334 | IPR003448 | Molybdopterin biosynthesis MoaE |
SuperFamily | SSF54690 | 8.11E-8 | 1272 | 1338 | IPR003448 | Molybdopterin biosynthesis MoaE |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006777 | Biological Process | Mo-molybdopterin cofactor biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1350 aa Download sequence Send to blast |
MQGSMTHKDI SGMFTNAAPS PSGPLSPRAG SALSPGGPYT VDIRMQLSVS DTKFSGSSTN 60 VDVLATLGGS SEATALNKSQ SVGSSLQNQN LSQLLRSAPG YGASSADQQH GATSNFTKSV 120 GMESETLAML QRQQHAATSN FPKLVEMESK TLDMLQRQQQ QQQASIHQHQ EYEHQGNNSV 180 EGLIYDISAE TSSGCRRRRI RDWSSDFQER CSQVNLEDWA SPRSTDGEEH ISLHMHDQWN 240 TTKNHELATA LQDCAPTTIR SKKAKVLKLQ HHPREDPRCI VMSSPVSASQ DKCRTNSGTT 300 WEIHLQQWNG MQRSSKLGAV ATGKHAEAGS ASPEGHGSIS LGAPHVLVDL DDEKKLTEIH 360 SEEARIKSSV SMTRSSEDNM KSLQETHRNI DLHHPNPCRV AGAGISFEMG SNTFLSNGMT 420 KSYETRELPN QLCSGNGYVG GSAFTGMEAW PQGGGGANDY LLHTSAAHIA HLLDFQIQEN 480 QRHLKQGILN YLPDDYMSGS RLADTVDYET GLRTGSSGVN LQKNGSSLCY SDLSMLPGQE 540 FAAANDTLLD SRCSSDEHLE ARAAYEMART EQHQAGLLSK SGFKRSSKGG PRRPNIIKGQ 600 WSPEEDRYLV GLVEMHGQQR WSLIATQLPG RIGKQCRERW HNHLRPDIKR DGWNTEEEEA 660 LVSAHNKLGN RWADIAKMIP GRTENAIKNH WNATMRRKDM RRKHRRVTDG SSDSLEVVPR 720 CTILRDYQQK VVAQRGGRKG KVLKSLATID NESRFNEGNR NDTQSRTSEL GSPHLTCDSP 780 SGWMSNETEK LSLPARFLEM STTEPDHTIV DMKIRASDSQ KECDRSRTTT HHAKGLAQDN 840 PFSLARSVGF EASSANPTKS LVSIWGQGAG SYSRPPVTFW GGEQWEGAGS EVFYTEPAAS 900 DRVENDDAAV WVTQINVPDF DVTPRFSDAA PVYQSSDIRN LKVTDQTMTF QLGTLDQIVN 960 GSSRSTSSPP PLLPDSLDVE AASSQSTQIL QQGKSTFTNK DLSTQAYLPL NATCSTLQGS 1020 DHFQTSVVLE KHVDNASGAA ESVVNFERTG IQNAGDNVLT LPERIGNYAH EIIRSTSTHP 1080 DNILTAASNI CKPMMVVGLS NNRTINIPNH QLPVNSFENT HASHVPRLPI FFGNLSHDTF 1140 SFHHQQAVNR VTGSPDHDIS DITSMLLPRV LISSMTDDIT SVTSGSTSFS NSDSLSRRYW 1200 NQSPQSSPKR GPSDLDLVEL VAKPLDQAPY LRKVKHHASS ESLRVSSNVC TVPNVSENGI 1260 DIRGINFHSH GHHEAESKLI HICSKMRSQW QLGCIALAHR MGVVGAGEVY AVVAVTSQDF 1320 SQATNAVNFA VECLQSEVSA FLHQDIRRI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-43 | 594 | 698 | 54 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-43 | 594 | 698 | 54 | 158 | MYB PROTO-ONCOGENE PROTEIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024376799.1 | 0.0 | uncharacterized protein LOC112282891 isoform X2 | ||||
TrEMBL | A0A2K1KIW0 | 0.0 | A0A2K1KIW0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S186_70V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 2e-47 | myb domain protein 119 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_7650V3.1.p |