PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c5_7060V3.6.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HRT-like

Protein Properties

Length: 595aa MW: 64423.4 Da PI: 9.9491

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c5_7060V3.6.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	39.9	7.2e-13	370	396	2	28
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 CG+ le+G++C++ Pvkg+KRC HK+ Pp3c5_7060V3.6.p 370 CGAPLENGNPCNALPVKGGKRCLLHKD 396 **************************8 PP
2	HRT-like	49.9	5.2e-16	545	574	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG++l dG+vC ++P ++RKRCe+HKG R Pp3c5_7060V3.6.p 545 ICGLRLPDGTVCADPPRPERKRCEAHKGLR 574 8***************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 595 aa Download sequence Send to blast
MLVSRIWNCA SEGLRFYSST QSEYCRGIVY CPLQVLVGPT DWKDHASGKI PGRFRTSNLS 60 SNYSGAGIFE LGVTPPAWLP PQRSNYSGFL KPQDVVVVYL GCAENVYQHL FRIGQTGAHL 120 EGARSTRLFA VGNETASKSA ADVQSLSQSR SFNLELGSLN MSLDRGPGGD GGYMSGGSRP 180 MSNASMDGTN SDAHSISEHH KRTSSYDQAA GIRSPSRRGP RLFSEVFALG CSIAFRWSVT 240 ENKIMAEKAE ADLIEVFDYA WKRGGNFRQR SSDVVSKIVM GGALGSNDPS YDCFGVRSSR 300 TWFFSPKSKV GVVIAARKPG IQEGCGRAGS RADRSRVADF FTLFKSSSQL GGKISKSSEF 360 TKFDIPLDRC GAPLENGNPC NALPVKGGKR CLLHKDSKKQ NQGKQVKVVL TPQSSIAHHI 420 PSSRAGSSSP ETQHHIHHAP ESPILPGPEP TSSSCFPFSI APASVPSRSS PEPKRRGSLS 480 FNSWLRTSEL RMAKSREWAE MNQAGAGNSR PDGPKRSSTY SGILPTCEES QLESSVSRSP 540 SRRDICGLRL PDGTVCADPP RPERKRCEAH KGLRNTLAPR SPTHAVTPTA QESF*

Sequence ? help Back to Top

Protein Sequence Length: 595 aa Download sequence Send to blast

MLVSRIWNCA SEGLRFYSST QSEYCRGIVY CPLQVLVGPT DWKDHASGKI PGRFRTSNLS  60
SNYSGAGIFE LGVTPPAWLP PQRSNYSGFL KPQDVVVVYL GCAENVYQHL FRIGQTGAHL  120
EGARSTRLFA VGNETASKSA ADVQSLSQSR SFNLELGSLN MSLDRGPGGD GGYMSGGSRP  180
MSNASMDGTN SDAHSISEHH KRTSSYDQAA GIRSPSRRGP RLFSEVFALG CSIAFRWSVT  240
ENKIMAEKAE ADLIEVFDYA WKRGGNFRQR SSDVVSKIVM GGALGSNDPS YDCFGVRSSR  300
TWFFSPKSKV GVVIAARKPG IQEGCGRAGS RADRSRVADF FTLFKSSSQL GGKISKSSEF  360
TKFDIPLDRC GAPLENGNPC NALPVKGGKR CLLHKDSKKQ NQGKQVKVVL TPQSSIAHHI  420
PSSRAGSSSP ETQHHIHHAP ESPILPGPEP TSSSCFPFSI APASVPSRSS PEPKRRGSLS  480
FNSWLRTSEL RMAKSREWAE MNQAGAGNSR PDGPKRSSTY SGILPTCEES QLESSVSRSP  540
SRRDICGLRL PDGTVCADPP RPERKRCEAH KGLRNTLAPR SPTHAVTPTA QESF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.14473	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024376573.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A9T912	0.0	A9T912_PHYPA; Predicted protein
STRING	PP1S186_22V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	3e-18	effector of transcription2

Link Out ? help Back to Top
Phytozome	Pp3c5_7060V3.6.p