PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c5_7060V3.5.p

Common Name

PHYPADRAFT_168719

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HRT-like

Protein Properties

Length: 435aa MW: 46930.6 Da PI: 10.3088

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c5_7060V3.5.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	40.4	5e-13	210	236	2	28
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 CG+ le+G++C++ Pvkg+KRC HK+ Pp3c5_7060V3.5.p 210 CGAPLENGNPCNALPVKGGKRCLLHKD 236 **************************8 PP
2	HRT-like	50.5	3.5e-16	385	414	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG++l dG+vC ++P ++RKRCe+HKG R Pp3c5_7060V3.5.p 385 ICGLRLPDGTVCADPPRPERKRCEAHKGLR 414 8***************************99 PP

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MSLDRGPGGD GGYMSGGSRP MSNASMDGTN SDAHSISEHH KRTSSYDQAA GIRSPSRRGP 60 RLFSEVFALG CSIAFRWSVT ENKIMAEKAE ADLIEVFDYA WKRGGNFRQR SSDVVSKIVM 120 GGALGSNDPS YDCFGVRSSR TWFFSPKSKV GVVIAARKPG IQEGCGRAGS RADRSRVADF 180 FTLFKSSSQL GGKISKSSEF TKFDIPLDRC GAPLENGNPC NALPVKGGKR CLLHKDSKKQ 240 NQGKQVKVVL TPQSSIAHHI PSSRAGSSSP ETQHHIHHAP ESPILPGPEP TSSSCFPFSI 300 APASVPSRSS PEPKRRGSLS FNSWLRTSEL RMAKSREWAE MNQAGAGNSR PDGPKRSSTY 360 SGILPTCEES QLESSVSRSP SRRDICGLRL PDGTVCADPP RPERKRCEAH KGLRNTLAPR 420 SPTHAVTPTA QESF*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MSLDRGPGGD GGYMSGGSRP MSNASMDGTN SDAHSISEHH KRTSSYDQAA GIRSPSRRGP  60
RLFSEVFALG CSIAFRWSVT ENKIMAEKAE ADLIEVFDYA WKRGGNFRQR SSDVVSKIVM  120
GGALGSNDPS YDCFGVRSSR TWFFSPKSKV GVVIAARKPG IQEGCGRAGS RADRSRVADF  180
FTLFKSSSQL GGKISKSSEF TKFDIPLDRC GAPLENGNPC NALPVKGGKR CLLHKDSKKQ  240
NQGKQVKVVL TPQSSIAHHI PSSRAGSSSP ETQHHIHHAP ESPILPGPEP TSSSCFPFSI  300
APASVPSRSS PEPKRRGSLS FNSWLRTSEL RMAKSREWAE MNQAGAGNSR PDGPKRSSTY  360
SGILPTCEES QLESSVSRSP SRRDICGLRL PDGTVCADPP RPERKRCEAH KGLRNTLAPR  420
SPTHAVTPTA QESF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.14473	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024376573.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A9T912	0.0	A9T912_PHYPA; Predicted protein
STRING	PP1S186_22V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	3e-18	effector of transcription2

Link Out ? help Back to Top
Phytozome	Pp3c5_7060V3.5.p
Entrez Gene	5938312

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]