PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_7060V3.4.p | ||||||||
Common Name | PHYPADRAFT_168719 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | HRT-like | ||||||||
Protein Properties | Length: 435aa MW: 46930.6 Da PI: 10.3088 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 40.4 | 5e-13 | 210 | 236 | 2 | 28 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 CG+ le+G++C++ Pvkg+KRC HK+ Pp3c5_7060V3.4.p 210 CGAPLENGNPCNALPVKGGKRCLLHKD 236 **************************8 PP | |||||||
2 | HRT-like | 50.5 | 3.5e-16 | 385 | 414 | 1 | 30 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG++l dG+vC ++P ++RKRCe+HKG R Pp3c5_7060V3.4.p 385 ICGLRLPDGTVCADPPRPERKRCEAHKGLR 414 8***************************99 PP |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MSLDRGPGGD GGYMSGGSRP MSNASMDGTN SDAHSISEHH KRTSSYDQAA GIRSPSRRGP 60 RLFSEVFALG CSIAFRWSVT ENKIMAEKAE ADLIEVFDYA WKRGGNFRQR SSDVVSKIVM 120 GGALGSNDPS YDCFGVRSSR TWFFSPKSKV GVVIAARKPG IQEGCGRAGS RADRSRVADF 180 FTLFKSSSQL GGKISKSSEF TKFDIPLDRC GAPLENGNPC NALPVKGGKR CLLHKDSKKQ 240 NQGKQVKVVL TPQSSIAHHI PSSRAGSSSP ETQHHIHHAP ESPILPGPEP TSSSCFPFSI 300 APASVPSRSS PEPKRRGSLS FNSWLRTSEL RMAKSREWAE MNQAGAGNSR PDGPKRSSTY 360 SGILPTCEES QLESSVSRSP SRRDICGLRL PDGTVCADPP RPERKRCEAH KGLRNTLAPR 420 SPTHAVTPTA QESF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.14473 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024376573.1 | 0.0 | protein EFFECTOR OF TRANSCRIPTION 2-like | ||||
TrEMBL | A9T912 | 0.0 | A9T912_PHYPA; Predicted protein | ||||
STRING | PP1S186_22V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 3e-18 | effector of transcription2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_7060V3.4.p |
Entrez Gene | 5938312 |
Publications ? help Back to Top | |||
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