PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c5_7060V3.2.p

Common Name

PHYPADRAFT_168719

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HRT-like

Protein Properties

Length: 620aa MW: 66962.2 Da PI: 10.1999

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c5_7060V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	39.8	7.6e-13	395	421	2	28
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 CG+ le+G++C++ Pvkg+KRC HK+ Pp3c5_7060V3.2.p 395 CGAPLENGNPCNALPVKGGKRCLLHKD 421 **************************8 PP
2	HRT-like	49.9	5.4e-16	570	599	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG++l dG+vC ++P ++RKRCe+HKG R Pp3c5_7060V3.2.p 570 ICGLRLPDGTVCADPPRPERKRCEAHKGLR 599 8***************************99 PP

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence Send to blast
MPLLGAGSGM GLVSDKPQPQ SQPQPRPEAG AGDVPKKKPR LKRENHTHVK HDECFSDWKV 60 LVGPTDWKDH ASGKIPGRFR TSNLSSNYSG AGIFELGVTP PAWLPPQRSN YSGFLKPQDV 120 VVVYLGCAEN VYQHLFRIGQ TGAHLEGARS TRLFAVGNET ASKSAADVQS LSQSRSFNLE 180 LGSLNMSLDR GPGGDGGYMS GGSRPMSNAS MDGTNSDAHS ISEHHKRTSS YDQAAGIRSP 240 SRRGPRLFSE VFALGCSIAF RWSVTENKIM AEKAEADLIE VFDYAWKRGG NFRQRSSDVV 300 SKIVMGGALG SNDPSYDCFG VRSSRTWFFS PKSKVGVVIA ARKPGIQEGC GRAGSRADRS 360 RVADFFTLFK SSSQLGGKIS KSSEFTKFDI PLDRCGAPLE NGNPCNALPV KGGKRCLLHK 420 DSKKQNQGKQ VKVVLTPQSS IAHHIPSSRA GSSSPETQHH IHHAPESPIL PGPEPTSSSC 480 FPFSIAPASV PSRSSPEPKR RGSLSFNSWL RTSELRMAKS REWAEMNQAG AGNSRPDGPK 540 RSSTYSGILP TCEESQLESS VSRSPSRRDI CGLRLPDGTV CADPPRPERK RCEAHKGLRN 600 TLAPRSPTHA VTPTAQESF*

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence Send to blast

MPLLGAGSGM GLVSDKPQPQ SQPQPRPEAG AGDVPKKKPR LKRENHTHVK HDECFSDWKV  60
LVGPTDWKDH ASGKIPGRFR TSNLSSNYSG AGIFELGVTP PAWLPPQRSN YSGFLKPQDV  120
VVVYLGCAEN VYQHLFRIGQ TGAHLEGARS TRLFAVGNET ASKSAADVQS LSQSRSFNLE  180
LGSLNMSLDR GPGGDGGYMS GGSRPMSNAS MDGTNSDAHS ISEHHKRTSS YDQAAGIRSP  240
SRRGPRLFSE VFALGCSIAF RWSVTENKIM AEKAEADLIE VFDYAWKRGG NFRQRSSDVV  300
SKIVMGGALG SNDPSYDCFG VRSSRTWFFS PKSKVGVVIA ARKPGIQEGC GRAGSRADRS  360
RVADFFTLFK SSSQLGGKIS KSSEFTKFDI PLDRCGAPLE NGNPCNALPV KGGKRCLLHK  420
DSKKQNQGKQ VKVVLTPQSS IAHHIPSSRA GSSSPETQHH IHHAPESPIL PGPEPTSSSC  480
FPFSIAPASV PSRSSPEPKR RGSLSFNSWL RTSELRMAKS REWAEMNQAG AGNSRPDGPK  540
RSSTYSGILP TCEESQLESS VSRSPSRRDI CGLRLPDGTV CADPPRPERK RCEAHKGLRN  600
TLAPRSPTHA VTPTAQESF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.14473	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024376573.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A2K1KIS6	0.0	A0A2K1KIS6_PHYPA; Uncharacterized protein
STRING	PP1S186_22V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	5e-18	effector of transcription2

Link Out ? help Back to Top
Phytozome	Pp3c5_7060V3.2.p
Entrez Gene	5938312

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]