PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c5_7060V3.1.p | ||||||||
Common Name | PHYPADRAFT_168719 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | HRT-like | ||||||||
Protein Properties | Length: 620aa MW: 66962.2 Da PI: 10.1999 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 39.8 | 7.6e-13 | 395 | 421 | 2 | 28 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 CG+ le+G++C++ Pvkg+KRC HK+ Pp3c5_7060V3.1.p 395 CGAPLENGNPCNALPVKGGKRCLLHKD 421 **************************8 PP | |||||||
2 | HRT-like | 49.9 | 5.4e-16 | 570 | 599 | 1 | 30 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG++l dG+vC ++P ++RKRCe+HKG R Pp3c5_7060V3.1.p 570 ICGLRLPDGTVCADPPRPERKRCEAHKGLR 599 8***************************99 PP |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 620 aa Download sequence Send to blast |
MPLLGAGSGM GLVSDKPQPQ SQPQPRPEAG AGDVPKKKPR LKRENHTHVK HDECFSDWKV 60 LVGPTDWKDH ASGKIPGRFR TSNLSSNYSG AGIFELGVTP PAWLPPQRSN YSGFLKPQDV 120 VVVYLGCAEN VYQHLFRIGQ TGAHLEGARS TRLFAVGNET ASKSAADVQS LSQSRSFNLE 180 LGSLNMSLDR GPGGDGGYMS GGSRPMSNAS MDGTNSDAHS ISEHHKRTSS YDQAAGIRSP 240 SRRGPRLFSE VFALGCSIAF RWSVTENKIM AEKAEADLIE VFDYAWKRGG NFRQRSSDVV 300 SKIVMGGALG SNDPSYDCFG VRSSRTWFFS PKSKVGVVIA ARKPGIQEGC GRAGSRADRS 360 RVADFFTLFK SSSQLGGKIS KSSEFTKFDI PLDRCGAPLE NGNPCNALPV KGGKRCLLHK 420 DSKKQNQGKQ VKVVLTPQSS IAHHIPSSRA GSSSPETQHH IHHAPESPIL PGPEPTSSSC 480 FPFSIAPASV PSRSSPEPKR RGSLSFNSWL RTSELRMAKS REWAEMNQAG AGNSRPDGPK 540 RSSTYSGILP TCEESQLESS VSRSPSRRDI CGLRLPDGTV CADPPRPERK RCEAHKGLRN 600 TLAPRSPTHA VTPTAQESF* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppa.14473 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024376573.1 | 0.0 | protein EFFECTOR OF TRANSCRIPTION 2-like | ||||
TrEMBL | A0A2K1KIS6 | 0.0 | A0A2K1KIS6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S186_22V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56780.1 | 5e-18 | effector of transcription2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c5_7060V3.1.p |
Entrez Gene | 5938312 |
Publications ? help Back to Top | |||
---|---|---|---|
|