PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c5_630V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NAC

Protein Properties

Length: 326aa MW: 36374.2 Da PI: 7.381

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c5_630V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.4	9.6e-52	14	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv +yL +k+e++ +++ vi+e+d+yk++PwdLp k+ +e ewyfFs+rd+ky++g r+nra++sgyWkatg+d++v++ Pp3c5_630V3.1.p 14 LPPGFRFHPTDEELVLHYLWRKAESEMFSI-PVITELDLYKFDPWDLPGKAIFGEGEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDRPVHK 106 79***********************999.89***********76667889*********************************9 PP NAM 95 k...kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +++g+kk Lvfykgrapkg+kt Wvmheyrl Pp3c5_630V3.1.p 107 AsrgTLQKIGVKKALVFYKGRAPKGVKTAWVMHEYRL 143 87666677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-62	4	173	IPR003441	NAC domain
PROSITE profile	PS51005	59.171	14	173	IPR003441	NAC domain
Pfam	PF02365	2.7E-27	15	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MASSSNVPLS EIELPPGFRF HPTDEELVLH YLWRKAESEM FSIPVITELD LYKFDPWDLP 60 GKAIFGEGEW YFFSPRDRKY PNGARPNRAA ASGYWKATGT DRPVHKASRG TLQKIGVKKA 120 LVFYKGRAPK GVKTAWVMHE YRLANGMCSP SSIHRKPDSL RLDDWVLCRI LHKSPSVQRA 180 SGKVRSSSNV EEVLPSLPEM ENSSFVMPSM GRGSCGLLDV DTLWEEKANL AEERLMNHQL 240 LNNASAMQPI SSWMSNQTAQ LHLNSYFDGL LAISEPFYLG SMSTFDSANT HTLLPVAVSE 300 QSATVSTFSS FPSSRTHEYP DHSVG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-74	1	179	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-74	1	179	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-74	1	179	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-74	1	179	4	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-74	1	179	7	174	NAC domain-containing protein 19
3swm_B	2e-74	1	179	7	174	NAC domain-containing protein 19
3swm_C	2e-74	1	179	7	174	NAC domain-containing protein 19
3swm_D	2e-74	1	179	7	174	NAC domain-containing protein 19
3swp_A	2e-74	1	179	7	174	NAC domain-containing protein 19
3swp_B	2e-74	1	179	7	174	NAC domain-containing protein 19
3swp_C	2e-74	1	179	7	174	NAC domain-containing protein 19
3swp_D	2e-74	1	179	7	174	NAC domain-containing protein 19
4dul_A	2e-74	1	179	4	171	NAC domain-containing protein 19
4dul_B	2e-74	1	179	4	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Up-regulated during anther and flower development and leaf senescence. {ECO:0000269\|PubMed:22278768}.
Uniprot	TISSUE SPECIFICITY: Highest expression in stamens. Expressed in leaves. {ECO:0000269\|PubMed:18813954, ECO:0000269\|PubMed:22278768}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024376336.1	0.0	NAC domain-containing protein 2-like
Refseq	XP_024376337.1	0.0	NAC domain-containing protein 2-like
Refseq	XP_024376338.1	0.0	NAC domain-containing protein 2-like
Refseq	XP_024376339.1	0.0	NAC domain-containing protein 2-like
Swissprot	Q39013	3e-77	NAC2_ARATH; NAC domain-containing protein 2
Swissprot	Q8H4S4	4e-77	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A2K1KHY6	0.0	A0A2K1KHY6_PHYPA; Uncharacterized protein
STRING	PP1S259_67V6.1	1e-142	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-79	NAC family protein

Link Out ? help Back to Top
Phytozome	Pp3c5_630V3.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]