PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c5_6300V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

LBD

Protein Properties

Length: 366aa MW: 39421.5 Da PI: 6.8965

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c5_6300V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.9	2.4e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++C+l+p++ ++q +++ +v+k+FG++ ++ +++a+pe++r+++++sl+yeA+ r+ +Pv Gavg+++++++q++ Pp3c5_6300V3.1.p 2 SCNGCRVLRKGCSDNCILRPCLqwietSEAQGHATVFVAKFFGRAGLMGFISAVPENQRSALFQSLLYEACGRTVNPVFGAVGLLWSGNWQIC 94 6*******************9998777889********************************************************* PP DUF260 89 qlkaelall 97 q++++++l Pp3c5_6300V3.1.p 95 QAAVDTVLK 103 9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.618	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-26	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MSCNGCRVLR KGCSDNCILR PCLQWIETSE AQGHATVFVA KFFGRAGLMG FISAVPENQR 60 SALFQSLLYE ACGRTVNPVF GAVGLLWSGN WQICQAAVDT VLKGGTLRPS SPSSLPSYTS 120 ANLSFAAPCF PALAMPGNFA TPAAGKVDDP IQITLSSNAP AENSLDQHTV SLGIGLPEDN 180 YAVSNERLIS CHDKMNSGSW HSEAVVAQNM ETNSTWRNDG QCDNWNPLHS AGEFQRDGLG 240 HKSNELKQRG THMRGEYVTP RRVKGRVQAS PEANFLSGER ACEELPVPGN GAEQLELDLT 300 LKVKGVKGEK TVGNKRQSSP CDSVKSEGSV TSLDSSVHEP PKPCNWALEM SLMPPTFRTL 360 LPLMQ*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MSCNGCRVLR KGCSDNCILR PCLQWIETSE AQGHATVFVA KFFGRAGLMG FISAVPENQR  60
SALFQSLLYE ACGRTVNPVF GAVGLLWSGN WQICQAAVDT VLKGGTLRPS SPSSLPSYTS  120
ANLSFAAPCF PALAMPGNFA TPAAGKVDDP IQITLSSNAP AENSLDQHTV SLGIGLPEDN  180
YAVSNERLIS CHDKMNSGSW HSEAVVAQNM ETNSTWRNDG QCDNWNPLHS AGEFQRDGLG  240
HKSNELKQRG THMRGEYVTP RRVKGRVQAS PEANFLSGER ACEELPVPGN GAEQLELDLT  300
LKVKGVKGEK TVGNKRQSSP CDSVKSEGSV TSLDSSVHEP PKPCNWALEM SLMPPTFRTL  360
LPLMQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.6093	1e-123	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024375699.1	0.0	uncharacterized protein LOC112282397
Refseq	XP_024375700.1	0.0	uncharacterized protein LOC112282397
TrEMBL	A0A2K1KIP4	0.0	A0A2K1KIP4_PHYPA; Uncharacterized protein
STRING	PP1S41_47V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	6e-66	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Pp3c5_6300V3.1.p