PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c5_4880V3.3.p

Common Name

PHYPADRAFT_73354

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

BES1

Protein Properties

Length: 502aa MW: 55207.3 Da PI: 8.1197

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c5_4880V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	155.1	5.1e-48	47	169	2	126
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspessl 94 + r+p+++ErEnnkrRERrRRaiaaki+aGLR +Gny+lpk+aD neVlkALc+eAGw ve+DGt +rkgs+p +++ + ++ + + s Pp3c5_4880V3.3.p 47 AVLRMPSARERENNKRRERRRRAIAAKIFAGLRTHGNYCLPKHADHNEVLKALCHEAGWQVEEDGTIFRKGSQPS-PRQVMTAQKTPEGTPSC 138 5679**********************************************************************9.44444444444444444 PP DUF822 95 qsslkssalaspvesysaspksssfpspssld 126 + s ks + +s s++ ++s++ +++d Pp3c5_4880V3.3.p 139 ERSFKSDTSPSTSCSQAG-QASDEPTCTARSD 169 444455444443333222.2222222233333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	7.6E-44	50	171	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MQVGNQSFEQ GDSNEVRKCT VRGCIKSTSG PWIVRRPPGK GQETAAAVLR MPSARERENN 60 KRRERRRRAI AAKIFAGLRT HGNYCLPKHA DHNEVLKALC HEAGWQVEED GTIFRKGSQP 120 SPRQVMTAQK TPEGTPSCER SFKSDTSPST SCSQAGQASD EPTCTARSDA AEVRQLGRTS 180 VDFQYEDNRQ YLDPLTNLQT MVDHASAGQA RNTHPNCGDS KNRLGWKSGP VFLLPEQTVS 240 LRHLSNLNDP PVPTSSGAED DRYVCPTRAV KNEWETTHGI SNAFCSGLRT MGKTSLITSA 300 SEKDVSSGHD KLSPTPHFAA TMNSVDLDRS LECRSPLGVL DHTTQLERDQ PNSHFSVQRR 360 GDFTLGPLLQ RKTQDPDVRK HFTLFPKAAD LLRQSHKEQG DQYSCLTHEM VDLTDEAYES 420 PQDGLFLCSG RAAATMSTGS TRVNLHPVNL VNERGGASSI SNQHRKTSAD GHARREITDE 480 LALTLCTSAR HSHSSELGRV A*

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MQVGNQSFEQ GDSNEVRKCT VRGCIKSTSG PWIVRRPPGK GQETAAAVLR MPSARERENN  60
KRRERRRRAI AAKIFAGLRT HGNYCLPKHA DHNEVLKALC HEAGWQVEED GTIFRKGSQP  120
SPRQVMTAQK TPEGTPSCER SFKSDTSPST SCSQAGQASD EPTCTARSDA AEVRQLGRTS  180
VDFQYEDNRQ YLDPLTNLQT MVDHASAGQA RNTHPNCGDS KNRLGWKSGP VFLLPEQTVS  240
LRHLSNLNDP PVPTSSGAED DRYVCPTRAV KNEWETTHGI SNAFCSGLRT MGKTSLITSA  300
SEKDVSSGHD KLSPTPHFAA TMNSVDLDRS LECRSPLGVL DHTTQLERDQ PNSHFSVQRR  360
GDFTLGPLLQ RKTQDPDVRK HFTLFPKAAD LLRQSHKEQG DQYSCLTHEM VDLTDEAYES  420
PQDGLFLCSG RAAATMSTGS TRVNLHPVNL VNERGGASSI SNQHRKTSAD GHARREITDE  480
LALTLCTSAR HSHSSELGRV A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	4e-18	50	125	372	447	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	4e-18	50	125	372	447	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	4e-18	50	125	372	447	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	4e-18	50	125	372	447	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024375445.1	0.0	uncharacterized protein LOC112282261
TrEMBL	A0A2K1KIH5	0.0	A0A2K1KIH5_PHYPA; Uncharacterized protein
STRING	PP1S41_189V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18890.1	1e-18	BES1/BZR1 homolog 3

Link Out ? help Back to Top
Phytozome	Pp3c5_4880V3.3.p
Entrez Gene	5923368

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]