PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_4880V3.1.p | ||||||||
Common Name | PHYPADRAFT_73354 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | BES1 | ||||||||
Protein Properties | Length: 502aa MW: 55207.3 Da PI: 8.1197 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 155.1 | 5.1e-48 | 47 | 169 | 2 | 126 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspessl 94 + r+p+++ErEnnkrRERrRRaiaaki+aGLR +Gny+lpk+aD neVlkALc+eAGw ve+DGt +rkgs+p +++ + ++ + + s Pp3c5_4880V3.1.p 47 AVLRMPSARERENNKRRERRRRAIAAKIFAGLRTHGNYCLPKHADHNEVLKALCHEAGWQVEEDGTIFRKGSQPS-PRQVMTAQKTPEGTPSC 138 5679**********************************************************************9.44444444444444444 PP DUF822 95 qsslkssalaspvesysaspksssfpspssld 126 + s ks + +s s++ ++s++ +++d Pp3c5_4880V3.1.p 139 ERSFKSDTSPSTSCSQAG-QASDEPTCTARSD 169 444455444443333222.2222222233333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 7.6E-44 | 50 | 171 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MQVGNQSFEQ GDSNEVRKCT VRGCIKSTSG PWIVRRPPGK GQETAAAVLR MPSARERENN 60 KRRERRRRAI AAKIFAGLRT HGNYCLPKHA DHNEVLKALC HEAGWQVEED GTIFRKGSQP 120 SPRQVMTAQK TPEGTPSCER SFKSDTSPST SCSQAGQASD EPTCTARSDA AEVRQLGRTS 180 VDFQYEDNRQ YLDPLTNLQT MVDHASAGQA RNTHPNCGDS KNRLGWKSGP VFLLPEQTVS 240 LRHLSNLNDP PVPTSSGAED DRYVCPTRAV KNEWETTHGI SNAFCSGLRT MGKTSLITSA 300 SEKDVSSGHD KLSPTPHFAA TMNSVDLDRS LECRSPLGVL DHTTQLERDQ PNSHFSVQRR 360 GDFTLGPLLQ RKTQDPDVRK HFTLFPKAAD LLRQSHKEQG DQYSCLTHEM VDLTDEAYES 420 PQDGLFLCSG RAAATMSTGS TRVNLHPVNL VNERGGASSI SNQHRKTSAD GHARREITDE 480 LALTLCTSAR HSHSSELGRV A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 4e-18 | 50 | 125 | 372 | 447 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 4e-18 | 50 | 125 | 372 | 447 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 4e-18 | 50 | 125 | 372 | 447 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 4e-18 | 50 | 125 | 372 | 447 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024375445.1 | 0.0 | uncharacterized protein LOC112282261 | ||||
TrEMBL | A0A2K1KIH5 | 0.0 | A0A2K1KIH5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S41_189V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP10084 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18890.1 | 1e-18 | BES1/BZR1 homolog 3 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_4880V3.1.p |
Entrez Gene | 5923368 |
Publications ? help Back to Top | |||
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