PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_4660V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 354aa MW: 38296.7 Da PI: 6.0099 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6.2e-17 | 73 | 123 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr ++ +g Wv eIr p++ + r++lg+f tae+Aa+a++ a+++l+g+ Pp3c5_4660V3.2.p 73 IYRGVRKRP-WGIWVTEIRRPKK---KSRIWLGSFATAEMAARAYDCAALALRGN 123 69*******.**********854...6*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.60E-29 | 72 | 130 | No hit | No description |
Pfam | PF00847 | 3.1E-12 | 72 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.2E-33 | 73 | 136 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.985 | 73 | 130 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 73 | 131 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-19 | 73 | 130 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.1E-9 | 74 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-9 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MSDACEDPGD VKRPDVGGNE RSPDGTNAAA GADSGADEQE DSSERVESPT SSRRQETEVR 60 KKAKAEGDTR HPIYRGVRKR PWGIWVTEIR RPKKKSRIWL GSFATAEMAA RAYDCAALAL 120 RGNGALLNFP KLAHSLPRLA DLSDKSIQAA ATLAANNFTH RGEGNKSLDQ LLTSTSQLPA 180 SSPTSKPDAD YQHYEQCHGS RQASKSTSLR TRTSPQSPYE SSPNGSKSSS TQAQPQRRED 240 SSSAPHLPAT LTGNNQRIIT DSSAGGTSRR DNVDYSSSRD HSMENFQHQV AGDNLPGSCS 300 VQQPMYVDSD DMFAIGLTSL CDAMCIPPPD SEHATETDGE EGSNTWEPHL WSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 71 | 130 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.14909 | 0.0 | sporophyte |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024374969.1 | 0.0 | ethylene-responsive transcription factor ERF034-like isoform X1 | ||||
Refseq | XP_024374970.1 | 0.0 | ethylene-responsive transcription factor ERF034-like isoform X1 | ||||
Refseq | XP_024374971.1 | 0.0 | ethylene-responsive transcription factor ERF034-like isoform X1 | ||||
Refseq | XP_024374972.1 | 0.0 | ethylene-responsive transcription factor ERF034-like isoform X1 | ||||
Refseq | XP_024374973.1 | 0.0 | ethylene-responsive transcription factor ERF034-like isoform X1 | ||||
Refseq | XP_024374975.1 | 0.0 | ethylene-responsive transcription factor ERF034-like isoform X1 | ||||
Refseq | XP_024374976.1 | 0.0 | ethylene-responsive transcription factor ERF034-like isoform X1 | ||||
Refseq | XP_024374977.1 | 0.0 | ethylene-responsive transcription factor ERF034-like isoform X1 | ||||
Refseq | XP_024374978.1 | 0.0 | ethylene-responsive transcription factor ERF034-like isoform X1 | ||||
Refseq | XP_024374979.1 | 0.0 | ethylene-responsive transcription factor ERF034-like isoform X1 | ||||
TrEMBL | A0A2K1KII3 | 0.0 | A0A2K1KII3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S41_212V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 1e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_4660V3.2.p |