PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_4660V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 417aa    MW: 45279.9 Da    PI: 7.3709
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_4660V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.17.8e-17136186256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr ++ +g Wv eIr p++   + r++lg+f tae+Aa+a++ a+++l+g+
  Pp3c5_4660V3.1.p 136 IYRGVRKRP-WGIWVTEIRRPKK---KSRIWLGSFATAEMAARAYDCAALALRGN 186
                       69*******.**********854...6*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.96E-29135193No hitNo description
PfamPF008474.0E-12135185IPR001471AP2/ERF domain
SMARTSM003808.2E-33136199IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-19136193IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-29136194IPR001471AP2/ERF domain
PROSITE profilePS5103222.985136193IPR001471AP2/ERF domain
PRINTSPR003672.8E-9137148IPR001471AP2/ERF domain
PRINTSPR003672.8E-9159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MNRHFHIQLG IAIKLLKKRL QDSKKIPCYG SKRVKLDSSF VVHDGPGPFL IAIESSSSPS  60
VISSRDACED PGDVKRPDVG GNERSPDGTN AAAGADSGAD EQEDSSERVE SPTSSRRQET  120
EVRKKAKAEG DTRHPIYRGV RKRPWGIWVT EIRRPKKKSR IWLGSFATAE MAARAYDCAA  180
LALRGNGALL NFPKLAHSLP RLADLSDKSI QAAATLAANN FTHRGEGNKS LDQLLTSTSQ  240
LPASSPTSKP DADYQHYEQC HGSRQASKST SLRTRTSPQS PYESSPNGSK SSSTQAQPQR  300
REDSSSAPHL PATLTGNNQR IITDSSAGGT SRRDNVDYSS SRDHSMENFQ HQVAGDNLPG  360
SCSVQQPMYV DSDDMFAIGL TSLCDAMCIP PPDSEHATET DGEEGSNTWE PHLWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-16137193360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A6e-161341931272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.149090.0sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024374969.10.0ethylene-responsive transcription factor ERF034-like isoform X1
RefseqXP_024374970.10.0ethylene-responsive transcription factor ERF034-like isoform X1
RefseqXP_024374971.10.0ethylene-responsive transcription factor ERF034-like isoform X1
RefseqXP_024374972.10.0ethylene-responsive transcription factor ERF034-like isoform X1
RefseqXP_024374973.10.0ethylene-responsive transcription factor ERF034-like isoform X1
RefseqXP_024374975.10.0ethylene-responsive transcription factor ERF034-like isoform X1
RefseqXP_024374976.10.0ethylene-responsive transcription factor ERF034-like isoform X1
RefseqXP_024374977.10.0ethylene-responsive transcription factor ERF034-like isoform X1
RefseqXP_024374978.10.0ethylene-responsive transcription factor ERF034-like isoform X1
RefseqXP_024374979.10.0ethylene-responsive transcription factor ERF034-like isoform X1
TrEMBLA0A2K1KII30.0A0A2K1KII3_PHYPA; Uncharacterized protein
STRINGPP1S41_212V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-24ERF family protein