PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_3970V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 957aa    MW: 105066 Da    PI: 7.1436
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_3970V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45.2e-08483504325
                       S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                       t++Cr++ + G+C++G+ C+F H
  Pp3c5_3970V3.2.p 483 TSICRYYNQ-GYCSRGEMCPFLH 504
                       889******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.751480507IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5480506IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6482505IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-6483505IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-6483505IPR000571Zinc finger, CCCH-type
PROSITE profilePS5030396.499615956IPR033133Pumilio homology domain
Gene3DG3DSA:1.25.10.105.2E-117625952IPR011989Armadillo-like helical
SuperFamilySSF483715.76E-106633951IPR016024Armadillo-type fold
PROSITE profilePS503028.617638673IPR001313Pumilio RNA-binding repeat
SMARTSM000254.2E-5638673IPR001313Pumilio RNA-binding repeat
PfamPF008065.1E-6640672IPR001313Pumilio RNA-binding repeat
CDDcd079202.85E-144641951IPR033712Pumilio, RNA binding domain
PfamPF008063.9E-11674708IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030212.63674709IPR001313Pumilio RNA-binding repeat
SMARTSM000254.1E-11674709IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.641710748IPR001313Pumilio RNA-binding repeat
SMARTSM000250.011712748IPR001313Pumilio RNA-binding repeat
PfamPF008061.1E-5714742IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.947749784IPR001313Pumilio RNA-binding repeat
SMARTSM000253.2E-6749784IPR001313Pumilio RNA-binding repeat
PfamPF008061.8E-7752783IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.247785820IPR001313Pumilio RNA-binding repeat
SMARTSM000251.3E-5785820IPR001313Pumilio RNA-binding repeat
PfamPF008061.8E-7789818IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.664821857IPR001313Pumilio RNA-binding repeat
SMARTSM000254.3821856IPR001313Pumilio RNA-binding repeat
PfamPF008061.3E-5824844IPR001313Pumilio RNA-binding repeat
SMARTSM000255.4857892IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503026.121865892IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.407893930IPR001313Pumilio RNA-binding repeat
SMARTSM000257.3895930IPR001313Pumilio RNA-binding repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 957 aa     Download sequence    Send to blast
MEQDDEEFEQ LLHEIPQATS PDTPNEIPRA TSAPPHLEEL QRVYGQNVDA RDFGLQPDEV  60
PVKPFIDIRC DEQYEDFYKS YSGAKKLPPP MDNRALYNDF PVLSPKASQL SYSLAGLQLD  120
SPRTRHRKHR QLEAQHKQQQ VQQQQMFQQR EPSPNHHTAA AHHFPNSSSN QMFGEPKMTS  180
AFGNLNFDGS SGRGLQTTSD ETGDGLTLSH GANGGNISNS QGPVESNGMY GNMDAFGGVG  240
TVGYGAGSGA SLETFTSRSP PPIDLFPRTS SAVEALGNGL YNGISDFSQV SSQAVEKLLR  300
QGSPGLNSYS APRGGEAYGS AVASSYEQQQ QSEVLEAVHA AARGQSASTP GTDFYSPSSQ  360
QQILYDKDIS SLYEAQRLQA QMAAIRYAQA QAQMEDEKRK QQQRLIIQQH QQQIVDRQNQ  420
ILLASLQAQQ TTGPYGRGGI APTMSSIHNQ VALQKLRQQQ MLEGLWAVQG LVPTESSRTT  480
TATSICRYYN QGYCSRGEMC PFLHAPSGGS TRVGHGASAS LKEGARSGQL AAVSRDERLP  540
AYPEKILQRR SARASNGGVA VVSVSTGLRR KGDGLSNGHA NGYSNGHIAL GGAAQLPSPF  600
IGDSQAHRAI QENLEFDSRL SVAHHLQQQQ PKYTKLDEVE GRIYLIAKDQ HGCRFLQKKF  660
DEGGPEDVQK IFYEIIGHIT ELMKDPFGNY LVQKLLEVCD ESQRMEILRV VTTDGELVKI  720
SLNMHGTRAV QKLIETLKSP DQVTMVITAL TEGVVELIKD LNGNHVVQRC LQKLSHEDSQ  780
FIFDAAAAHC VEIATHRHGC CVMQRCVDFA SAPQKQRLVA VIAANALTLS QDPYGNYVVQ  840
YILDLKQGWA TSEVMLRLEG SYAFLAMQKF SSNVVEKCLK LGVEEHRGRL VRELTASSRL  900
GQLLQDQYAN YVIQSALSVC KGPLHAGLVD AIRPYLPALR NSPYGKRILS RTNIKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dzs_A3e-7563694930350Pumilio homology domain family member 4
4dzs_B3e-7563694930350Pumilio homology domain family member 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375670.10.0uncharacterized protein LOC112282379
TrEMBLA0A2K1KID30.0A0A2K1KID3_PHYPA; Uncharacterized protein
STRINGPP1S41_292V6.10.0(Physcomitrella patens)