PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_3550V3.5.p | ||||||||
Common Name | PHYPADRAFT_229274 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C3H | ||||||||
Protein Properties | Length: 390aa MW: 41757.4 Da PI: 9.7243 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.8 | 1.5e-06 | 344 | 366 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++ C +f+ + C+ G++C F H Pp3c5_3550V3.5.p 344 RKACIYFSTSRGCRNGSSCAFLH 366 678******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.343 | 341 | 369 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-4 | 344 | 366 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-4 | 345 | 367 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MPVKPRTWFP VAPLENNNLS LPAHTTPAYG PPVTVNRNII PPNGTVVQTT NMSNARTGSL 60 GLPVRAAEGG TEPDVPAAAA AAYAALQQSN DTTMIDRELL IKFLTNPSML QSLSEKLAQN 120 PPGNYGVVNR RIPESVDHSG IGARGNGRVW NPTVTEHAKS GQRHLETAVG ITDPHMRHGY 180 DRPPGFGAPS GANALGQAPP QPGQGYAHPG PLTIQSLPLP NMPPPTSVGY DQSIVSGSGR 240 PISQRDEQYY KDLISQHGKN EEDIWGAIGV PETGNSYPGG GRPRASGLDR EKRLGSAERT 300 ERPERTDSRA RWAGREDVDM AGLSIRQGDG DQANRSGQSR GKSRKACIYF STSRGCRNGS 360 SCAFLHETNN AERAKRPKLE GKESNIGYR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024376770.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like isoform X1 | ||||
Refseq | XP_024376771.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like isoform X2 | ||||
TrEMBL | A9SFA9 | 0.0 | A9SFA9_PHYPA; Predicted protein | ||||
STRING | PP1S72_333V6.1 | 0.0 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_3550V3.5.p |
Entrez Gene | 5928221 |
Publications ? help Back to Top | |||
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