PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c5_3550V3.3.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C3H

Protein Properties

Length: 619aa MW: 66470.6 Da PI: 7.097

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c5_3550V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19	2.5e-06	573	595	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++ C +f+ + C+ G++C F H Pp3c5_3550V3.3.p 573 RKACIYFSTSRGCRNGSSCAFLH 595 678******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.343	570	598	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.8E-4	574	596	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence Send to blast
MATVSSLPPG FEGTVCGILP VPHATQTTVP KQARVNKKVS WASEGDLCQV RLFAAEDAPA 60 QSSIMLQDLL QAKKARFMHA LNPIVSVDLP PGFGPSSLMG VKPLVAPILP SVSWRIPECF 120 KLDPTWLVMA GEESKEVFAQ KQRENRTLEA VYPRPSAIPE SPAEPSEVQL PFDEDDSNTL 180 IIPVVPLEDD ELPEADDLPT TSGSTYKSKQ EPFSGLKSLS PPPGFLSTSM PVKPRTWFPV 240 APLENNNLSL PAHTTPAYGP PVTVNRNIIP PNGTVVQTTN MSNARTGSLG LPVRAAEGGT 300 EPDVPAAAAA AYAALQQSND TTMIDRELLI KFLTNPSMLQ SLSEKLAQNP PGNYGVVNRR 360 IPESVDHSGI GARGNGRVWN PTVTEHAKSG QRHLETAVGI TDPHMRHGYD RPPGFGAPSG 420 ANALGQAPPQ PGQGYAHPGP LTIQSLPLPN MPPPTSVGYD QSIVSGSGRP ISQRDEQYYK 480 DLISQHGKNE EDIWGAIGVP ETGNSYPGGG RPRASGLDRE KRLGSAERTE RPERTDSRAR 540 WAGREDVDMA GLSIRQGDGD QANRSGQSRG KSRKACIYFS TSRGCRNGSS CAFLHETNNA 600 ERAKRPKLEG KESNIGYR*

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence Send to blast

MATVSSLPPG FEGTVCGILP VPHATQTTVP KQARVNKKVS WASEGDLCQV RLFAAEDAPA  60
QSSIMLQDLL QAKKARFMHA LNPIVSVDLP PGFGPSSLMG VKPLVAPILP SVSWRIPECF  120
KLDPTWLVMA GEESKEVFAQ KQRENRTLEA VYPRPSAIPE SPAEPSEVQL PFDEDDSNTL  180
IIPVVPLEDD ELPEADDLPT TSGSTYKSKQ EPFSGLKSLS PPPGFLSTSM PVKPRTWFPV  240
APLENNNLSL PAHTTPAYGP PVTVNRNIIP PNGTVVQTTN MSNARTGSLG LPVRAAEGGT  300
EPDVPAAAAA AYAALQQSND TTMIDRELLI KFLTNPSMLQ SLSEKLAQNP PGNYGVVNRR  360
IPESVDHSGI GARGNGRVWN PTVTEHAKSG QRHLETAVGI TDPHMRHGYD RPPGFGAPSG  420
ANALGQAPPQ PGQGYAHPGP LTIQSLPLPN MPPPTSVGYD QSIVSGSGRP ISQRDEQYYK  480
DLISQHGKNE EDIWGAIGVP ETGNSYPGGG RPRASGLDRE KRLGSAERTE RPERTDSRAR  540
WAGREDVDMA GLSIRQGDGD QANRSGQSRG KSRKACIYFS TSRGCRNGSS CAFLHETNNA  600
ERAKRPKLEG KESNIGYR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024376770.1	0.0	zinc finger CCCH domain-containing protein 30-like isoform X1
TrEMBL	A9SFA9	0.0	A9SFA9_PHYPA; Predicted protein
STRING	PP1S72_333V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2129	6	8

Link Out ? help Back to Top
Phytozome	Pp3c5_3550V3.3.p