PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c5_3550V3.2.p

Common Name

PHYPADRAFT_229274

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C3H

Protein Properties

Length: 601aa MW: 64851.8 Da PI: 6.6873

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c5_3550V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19	2.4e-06	555	577	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++ C +f+ + C+ G++C F H Pp3c5_3550V3.2.p 555 RKACIYFSTSRGCRNGSSCAFLH 577 678******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.343	552	580	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.6E-4	556	578	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence Send to blast
MPSQDVYPRQ SAFLDLSVYV LSLADSYIVK LVRLFAAEDA PAQSSIMLQD LLQAKKARFM 60 HALNPIVSVD LPPGFGPSSL MGVKPLVAPI LPSVSWRIPE CFKLDPTWLV MAGEESKEVF 120 AQKQRENRTL EAVYPRPSAI PESPAEPSEV QLPFDEDDSN TLIIPVVPLE DDELPEADDL 180 PTTSGSTYKS KQEPFSGLKS LSPPPGFLST SMPVKPRTWF PVAPLENNNL SLPAHTTPAY 240 GPPVTVNRNI IPPNGTVVQT TNMSNARTGS LGLPVRAAEG GTEPDVPAAA AAAYAALQQS 300 NDTTMIDREL LIKFLTNPSM LQSLSEKLAQ NPPGNYGVVN RRIPESVDHS GIGARGNGRV 360 WNPTVTEHAK SGQRHLETAV GITDPHMRHG YDRPPGFGAP SGANALGQAP PQPGQGYAHP 420 GPLTIQSLPL PNMPPPTSVG YDQSIVSGSG RPISQRDEQY YKDLISQHGK NEEDIWGAIG 480 VPETGNSYPG GGRPRASGLD REKRLGSAER TERPERTDSR ARWAGREDVD MAGLSIRQGD 540 GDQANRSGQS RGKSRKACIY FSTSRGCRNG SSCAFLHETN NAERAKRPKL EGKESNIGYR 600 *

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence Send to blast

MPSQDVYPRQ SAFLDLSVYV LSLADSYIVK LVRLFAAEDA PAQSSIMLQD LLQAKKARFM  60
HALNPIVSVD LPPGFGPSSL MGVKPLVAPI LPSVSWRIPE CFKLDPTWLV MAGEESKEVF  120
AQKQRENRTL EAVYPRPSAI PESPAEPSEV QLPFDEDDSN TLIIPVVPLE DDELPEADDL  180
PTTSGSTYKS KQEPFSGLKS LSPPPGFLST SMPVKPRTWF PVAPLENNNL SLPAHTTPAY  240
GPPVTVNRNI IPPNGTVVQT TNMSNARTGS LGLPVRAAEG GTEPDVPAAA AAAYAALQQS  300
NDTTMIDREL LIKFLTNPSM LQSLSEKLAQ NPPGNYGVVN RRIPESVDHS GIGARGNGRV  360
WNPTVTEHAK SGQRHLETAV GITDPHMRHG YDRPPGFGAP SGANALGQAP PQPGQGYAHP  420
GPLTIQSLPL PNMPPPTSVG YDQSIVSGSG RPISQRDEQY YKDLISQHGK NEEDIWGAIG  480
VPETGNSYPG GGRPRASGLD REKRLGSAER TERPERTDSR ARWAGREDVD MAGLSIRQGD  540
GDQANRSGQS RGKSRKACIY FSTSRGCRNG SSCAFLHETN NAERAKRPKL EGKESNIGYR  600
*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024376770.1	0.0	zinc finger CCCH domain-containing protein 30-like isoform X1
TrEMBL	A9SFA9	0.0	A9SFA9_PHYPA; Predicted protein
STRING	PP1S72_333V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c5_3550V3.2.p
Entrez Gene	5928221

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]