PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c5_3550V3.1.p

Common Name

PHYPADRAFT_229274

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C3H

Protein Properties

Length: 555aa MW: 59794 Da PI: 7.0672

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c5_3550V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.2e-06	509	531	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++ C +f+ + C+ G++C F H Pp3c5_3550V3.1.p 509 RKACIYFSTSRGCRNGSSCAFLH 531 678******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.343	506	534	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.2E-4	510	532	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence Send to blast
MLQDLLQAKK ARFMHALNPI VSVDLPPGFG PSSLMGVKPL VAPILPSVSW RIPECFKLDP 60 TWLVMAGEES KEVFAQKQRE NRTLEAVYPR PSAIPESPAE PSEVQLPFDE DDSNTLIIPV 120 VPLEDDELPE ADDLPTTSGS TYKSKQEPFS GLKSLSPPPG FLSTSMPVKP RTWFPVAPLE 180 NNNLSLPAHT TPAYGPPVTV NRNIIPPNGT VVQTTNMSNA RTGSLGLPVR AAEGGTEPDV 240 PAAAAAAYAA LQQSNDTTMI DRELLIKFLT NPSMLQSLSE KLAQNPPGNY GVVNRRIPES 300 VDHSGIGARG NGRVWNPTVT EHAKSGQRHL ETAVGITDPH MRHGYDRPPG FGAPSGANAL 360 GQAPPQPGQG YAHPGPLTIQ SLPLPNMPPP TSVGYDQSIV SGSGRPISQR DEQYYKDLIS 420 QHGKNEEDIW GAIGVPETGN SYPGGGRPRA SGLDREKRLG SAERTERPER TDSRARWAGR 480 EDVDMAGLSI RQGDGDQANR SGQSRGKSRK ACIYFSTSRG CRNGSSCAFL HETNNAERAK 540 RPKLEGKESN IGYR*

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence Send to blast

MLQDLLQAKK ARFMHALNPI VSVDLPPGFG PSSLMGVKPL VAPILPSVSW RIPECFKLDP  60
TWLVMAGEES KEVFAQKQRE NRTLEAVYPR PSAIPESPAE PSEVQLPFDE DDSNTLIIPV  120
VPLEDDELPE ADDLPTTSGS TYKSKQEPFS GLKSLSPPPG FLSTSMPVKP RTWFPVAPLE  180
NNNLSLPAHT TPAYGPPVTV NRNIIPPNGT VVQTTNMSNA RTGSLGLPVR AAEGGTEPDV  240
PAAAAAAYAA LQQSNDTTMI DRELLIKFLT NPSMLQSLSE KLAQNPPGNY GVVNRRIPES  300
VDHSGIGARG NGRVWNPTVT EHAKSGQRHL ETAVGITDPH MRHGYDRPPG FGAPSGANAL  360
GQAPPQPGQG YAHPGPLTIQ SLPLPNMPPP TSVGYDQSIV SGSGRPISQR DEQYYKDLIS  420
QHGKNEEDIW GAIGVPETGN SYPGGGRPRA SGLDREKRLG SAERTERPER TDSRARWAGR  480
EDVDMAGLSI RQGDGDQANR SGQSRGKSRK ACIYFSTSRG CRNGSSCAFL HETNNAERAK  540
RPKLEGKESN IGYR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024376770.1	0.0	zinc finger CCCH domain-containing protein 30-like isoform X1
TrEMBL	A9SFA9	0.0	A9SFA9_PHYPA; Predicted protein
STRING	PP1S72_333V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c5_3550V3.1.p
Entrez Gene	5928221

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]