PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_2900V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 534aa    MW: 59058.1 Da    PI: 7.5202
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_2900V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.3e-18256305355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+++AeIrd  +ng  +r++lg+++ta++Aa a+++a+ +++g
  Pp3c5_2900V3.2.p 256 YRGVRRRP-WGKFAAEIRDSAQNG--ARIWLGTYDTAYDAACAYDQAAFEMRG 305
                       9*******.**********65565..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.6E-34255319IPR001471AP2/ERF domain
CDDcd000183.26E-27255313No hitNo description
Gene3DG3DSA:3.30.730.107.6E-29255314IPR001471AP2/ERF domain
PROSITE profilePS5103222.471255313IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21256314IPR016177DNA-binding domain
PfamPF008475.6E-12256305IPR001471AP2/ERF domain
PRINTSPR003674.9E-12256267IPR001471AP2/ERF domain
PRINTSPR003674.9E-12295315IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MAVLPYNTVP RTTMQSQGMI EEFRHYLLED DDNCLPEEHF LPPAHMMVLG GDLSTEAFFK  60
SLISPMPSPK SGFGCREVMP IWSCAGSQID GAADEREFSD SQPRVQDRHQ VISNRTGRPL  120
PTLTLPDSFL ATKRSSKCIV SESTTLSGIS KSSSENEESE NMFFLSVLRD HESKVEGWYD  180
PAPYSKTDPC SSQIQSSSSQ GTEPIPTAMR QSIVAQQEGS VEQKSMSIDS VPSNNSESSP  240
SVPRSTTLKL PRSLNYRGVR RRPWGKFAAE IRDSAQNGAR IWLGTYDTAY DAACAYDQAA  300
FEMRGCKALL NFPLKANIYA ANLAGKNSED HRPSDSSSSG SPVLRTPNKI QVPVSVSTER  360
LHPHYQRDSF PSRVTSYGSP TFPGSRISPT PLSMQSPSQS GGISPEMQFR AALWLQRAAA  420
SVQESSSLSP YIQMAQLLGA RQRIAAVPPY YDDFTPSQQI PDVRGYPFPA QAAMDYHDAI  480
AQRQSASEPM DPPAAVSFRS RVKRSRSREL WEESVKRTCR GGLWQHQVPV RFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-27255317567ATERF1
3gcc_A2e-27255317567ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1502507KRSRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.151990.0gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376531.10.0uncharacterized protein LOC112282738
TrEMBLA0A2K1KI910.0A0A2K1KI91_PHYPA; Uncharacterized protein
STRINGPP1S72_230V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.14e-20ethylene responsive element binding factor 2