PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_2900V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 534aa MW: 59058.1 Da PI: 7.5202 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.4 | 7.3e-18 | 256 | 305 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd +ng +r++lg+++ta++Aa a+++a+ +++g Pp3c5_2900V3.1.p 256 YRGVRRRP-WGKFAAEIRDSAQNG--ARIWLGTYDTAYDAACAYDQAAFEMRG 305 9*******.**********65565..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.6E-34 | 255 | 319 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.26E-27 | 255 | 313 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.6E-29 | 255 | 314 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.471 | 255 | 313 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 256 | 314 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.6E-12 | 256 | 305 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-12 | 256 | 267 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-12 | 295 | 315 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MAVLPYNTVP RTTMQSQGMI EEFRHYLLED DDNCLPEEHF LPPAHMMVLG GDLSTEAFFK 60 SLISPMPSPK SGFGCREVMP IWSCAGSQID GAADEREFSD SQPRVQDRHQ VISNRTGRPL 120 PTLTLPDSFL ATKRSSKCIV SESTTLSGIS KSSSENEESE NMFFLSVLRD HESKVEGWYD 180 PAPYSKTDPC SSQIQSSSSQ GTEPIPTAMR QSIVAQQEGS VEQKSMSIDS VPSNNSESSP 240 SVPRSTTLKL PRSLNYRGVR RRPWGKFAAE IRDSAQNGAR IWLGTYDTAY DAACAYDQAA 300 FEMRGCKALL NFPLKANIYA ANLAGKNSED HRPSDSSSSG SPVLRTPNKI QVPVSVSTER 360 LHPHYQRDSF PSRVTSYGSP TFPGSRISPT PLSMQSPSQS GGISPEMQFR AALWLQRAAA 420 SVQESSSLSP YIQMAQLLGA RQRIAAVPPY YDDFTPSQQI PDVRGYPFPA QAAMDYHDAI 480 AQRQSASEPM DPPAAVSFRS RVKRSRSREL WEESVKRTCR GGLWQHQVPV RFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-27 | 255 | 317 | 5 | 67 | ATERF1 |
3gcc_A | 2e-27 | 255 | 317 | 5 | 67 | ATERF1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 502 | 507 | KRSRSR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.15199 | 0.0 | gametophore |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024376531.1 | 0.0 | uncharacterized protein LOC112282738 | ||||
TrEMBL | A0A2K1KI91 | 0.0 | A0A2K1KI91_PHYPA; Uncharacterized protein | ||||
STRING | PP1S72_230V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 4e-20 | ethylene responsive element binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_2900V3.1.p |