PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_2780V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 458aa    MW: 50381.8 Da    PI: 6.8441
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_2780V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-1670129155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  ++n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Pp3c5_2780V3.1.p  70 SIYRGVTRHRWTGRYEAHLWDkSTWNEaqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 129
                       57*******************666666666446*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.3E-1770138IPR016177DNA-binding domain
PfamPF008472.3E-1270129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-1571138IPR001471AP2/ERF domain
SMARTSM003802.6E-2571143IPR001471AP2/ERF domain
PROSITE profilePS5103220.12671137IPR001471AP2/ERF domain
PRINTSPR003674.8E-57283IPR001471AP2/ERF domain
PRINTSPR003674.8E-5119139IPR001471AP2/ERF domain
SMARTSM003800.0032173239IPR001471AP2/ERF domain
PROSITE profilePS510328.57173233IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MEPMKLKMKG PSESGNEEIT PQRPATLESP VGSPVQEHRG IKRSRRERGG SSAKERISKM  60
PACVPGKRSS IYRGVTRHRW TGRYEAHLWD KSTWNEAQNK KGKQVYLGAY DDEEAAARAY  120
DLAALKYWGP GTLINFPVTD YARDVEEMQS ISREDYLASL RRKGSGFLRG GSKFKGMTRH  180
PSMGKWEARL GHILGHKYSY TGNPSSIMSQ EDATAFDIQS LDYRGFSAGT NLDLTRYITW  240
LRPEKVQTAT TSSGLGASAP VTAATTLNPK EEEEGGASPT SWDDGPSQPD DQSQPEGQQS  300
HQAWPGQASE PYQLPSLGVL HSNPHKKSSS PSALSLLLSS SIFKSMRERT SNSLALAAEI  360
DTKYEPAAEI EGHYQFLQAL HTSRASHGET SNEMFGTHLH YEMDSFLPSY GSSDRLGELE  420
EAVAVSAAHS QGPSFSHSPT DWDPFTQPMT TQQLTSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376512.10.0AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2K1KI790.0A0A2K1KI79_PHYPA; Uncharacterized protein
STRINGPP1S72_220V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.15e-67AP2 family protein