PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_22750V3.1.p
Common NamePHYPADRAFT_69445
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family SBP
Protein Properties Length: 678aa    MW: 73322.7 Da    PI: 7.094
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_22750V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.62.8e-41222299178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cq+egC++dls+ k+yhrrhkvCe hskap+v v g++qrfCqqCsrfh+l+efD++krsCr+rLa+hn+rrrk+q+
  Pp3c5_22750V3.1.p 222 TCQAEGCKTDLSTSKQYHRRHKVCELHSKAPNVQVGGQTQRFCQQCSRFHSLEEFDNGKRSCRKRLADHNRRRRKPQP 299
                        6**************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.7E-36215284IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.889220297IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.89E-38221300IPR004333Transcription factor, SBP-box
PfamPF031101.5E-31223296IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MNPSAHNNEQ QGDLSWSTED WGNPSAVSTL DQASRQYSSA GRLEWEWDPM ILAQHPGSGG  60
STADDGHDGA RMKNHVTAGT MSSFRASYNM NMLSAGLPSN FTQNPMGIFS SAGIRNYGTL  120
DGSAQLSTSS NLHGVLGTSG IPGLAATSGT GLDNDIRSFD HSRREFLVTG MHDHVKREEV  180
FDGHARIGLN LGVRTYFSTE ETAASGLGKR HRTGSPGSQV PTCQAEGCKT DLSTSKQYHR  240
RHKVCELHSK APNVQVGGQT QRFCQQCSRF HSLEEFDNGK RSCRKRLADH NRRRRKPQPY  300
ASVSAGKLAE PIGIKNEDDP SGSNRVNDSK SMIIPLKCRS SPSSVSLEDS DEKPGPVGNS  360
LHFLSCNQGI RRGPGDDQHL SHSGMQMSSQ DMKRSEALLS SLSPAPLMLQ NAKQQMPLVG  420
GNDNHDQDHS VYQQHLQAIS MGQTSGPKLS LSSLGGQLGL SHQAGGRRQT ISGQMHNEIE  480
TPVPWLRPPN LRSDLTQVIG RQSTMNLQHL MSNDSKSGII STSANSQEPD VQAFPSSSQN  540
LIPRDIASPE WMLGNMTGQA VRAGSNPFVS SSLNNITGNG QLESVHQIMP LIDSSSEDGR  600
IPSNGGSDQI SHRTHTPVEF MREHNTGTDS EPRGDDNNSR SGGSAVGSPD IKYHELHALR  660
PYESVSSSIY DSNHNLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-28214296184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279296KRSCRKRLADHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ9683190.0AJ968319.1 Physcomitrella patens SBP4 gene for squamosa promoter binding protein 4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376553.10.0uncharacterized protein LOC112282745
RefseqXP_024376554.10.0uncharacterized protein LOC112282745
RefseqXP_024376555.10.0uncharacterized protein LOC112282745
RefseqXP_024376556.10.0uncharacterized protein LOC112282745
RefseqXP_024376558.10.0uncharacterized protein LOC112282745
RefseqXP_024376559.10.0uncharacterized protein LOC112282745
RefseqXP_024376560.10.0uncharacterized protein LOC112282745
RefseqXP_024376561.10.0uncharacterized protein LOC112282745
TrEMBLA0A2K1KKS50.0A0A2K1KKS5_PHYPA; Uncharacterized protein
STRINGPP1S252_40V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-44squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]